Non-Coding RNA Search

Ss1.1-rcsk18_b23.5

Sequence:


               
               CTGAGCTTGGTTCATTTGCTTTTGAAGAGGGTTTTTTGCCCAAACCTTGTAAGGAGCGAG
AAGTTCACTGGGGCTTCTGGAGCCAGTGAGAGTCTTTGTTCTGTGGAATTTGAAGCCAGA
ACCTTTTAAATCTTCACAGTGATGGGATTGAAGAGGAGCATAAACCCCCAAATGGAAAAC
TATTTTTAGAAAATAGTATCATTTTTGATTGCTTTTGTATTTTATTTTGCAATAACAGAC
ACATCTAAAAAATAAAGATTTATAACTGAGTATTAAAAAAAAAAAAAAAAAAAACCTCGT
GCCGAATTCGGCACGAGGGTCCTGCGGCTCTTCTCACGGGAGAAGCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGAGCTTGGTTCATTTGCTTTTGAAGAGGGTTTTTTGCCCAAACCTTGTAAGGAGCGAG
AAGTTCACTGGGGCTTCTGGAGCCAGTGAGAGTCTTTGTTCTGTGGAATTTGAAGCCAGA
ACCTTTTAAATCTTCACAGTGATGGGATTGAAGAGGAGCATAAACCCCCAAATGGAAAAC
TATTTTTAGAAAATAGTATCATTTTTGATTGCTTTTGTATTTTATTTTGCAATAACAGAC
ACATCTAAAAAATAAAGATTTATAACTGAGTATTAAAAAAAAAAAAAAAAAAAACCTCGT
GCCGAATTCGGCACGAGGGTCCTGCGGCTCTTCTCACGGGAGAAGCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               2-91, - strand, RNAz p=0.99998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-91, - strand, RNAz p=0.99998

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-269, gnl|bosTau2|chr21 (35965676-35965943)
               

               
               2-269, gnl|canFam2|chr8 (4809198-4809418)
               

               
               2-269, gnl|dasNov1|scaffold_3844 (47269-47028)
               

               
               2-269, gnl|echTel1|scaffold_276601 (8563-8812)
               

               
               2-269, gnl|hg17|chr13 (64429691-64429938)
               

               
               2-269, gnl|Hg17|chr14 (92240190-92239914)
               

               
               2-269, gnl|loxAfr1|scaffold_26533 (24652-24417)
               

               
               2-269, gnl|mm7|chr12 (99889429-99889615)
               

               
               2-269, gnl|Mm7|chr12 (99889678-99889397)
               

               
               2-269, gnl|monDom2|scaffold_8 (30874848-30875102)
               

               
               2-269, gnl|oryCun1|scaffold_186925 (29663-29892)
               

               
               2-269, gnl|panTro1|chr14 (46775635-46775892)
               

               
               2-269, gnl|rn3|chr6 (126672685-126672885)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-269, gnl|bosTau2|chr21 (35965676-35965943)
               

               
               2-269, gnl|canFam2|chr8 (4809198-4809418)
               

               
               2-269, gnl|dasNov1|scaffold_3844 (47269-47028)
               

               
               2-269, gnl|echTel1|scaffold_276601 (8563-8812)
               

               
               2-269, gnl|hg17|chr13 (64429691-64429938)
               

               
               2-269, gnl|Hg17|chr14 (92240190-92239914)
               

               
               2-269, gnl|loxAfr1|scaffold_26533 (24652-24417)
               

               
               2-269, gnl|mm7|chr12 (99889429-99889615)
               

               
               2-269, gnl|Mm7|chr12 (99889678-99889397)
               

               
               2-269, gnl|monDom2|scaffold_8 (30874848-30875102)
               

               
               2-269, gnl|oryCun1|scaffold_186925 (29663-29892)
               

               
               2-269, gnl|panTro1|chr14 (46775635-46775892)
               

               
               2-269, gnl|rn3|chr6 (126672685-126672885)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               csk (0.140746)

	2-269, gnl\|bosTau2\|chr21 (35965676-35965943)
	2-269, gnl\|canFam2\|chr8 (4809198-4809418)
	2-269, gnl\|dasNov1\|scaffold_3844 (47269-47028)
	2-269, gnl\|echTel1\|scaffold_276601 (8563-8812)
	2-269, gnl\|hg17\|chr13 (64429691-64429938)
	2-269, gnl\|Hg17\|chr14 (92240190-92239914)
	2-269, gnl\|loxAfr1\|scaffold_26533 (24652-24417)
	2-269, gnl\|mm7\|chr12 (99889429-99889615)
	2-269, gnl\|Mm7\|chr12 (99889678-99889397)
	2-269, gnl\|monDom2\|scaffold_8 (30874848-30875102)
	2-269, gnl\|oryCun1\|scaffold_186925 (29663-29892)
	2-269, gnl\|panTro1\|chr14 (46775635-46775892)
	2-269, gnl\|rn3\|chr6 (126672685-126672885)