Ss1.1-rcsk18_e19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATTGTGGAAGAAGAGAGAATGAAGAAGAAAGAAGAAAAAGAGAGGCTTAAAATAGAAA GAGAAAAGGAAAGAGAGAAATTGCGTGAAGAAAAGAAAAAATATATGGAATACTTAAAAC AGTGGAGTAAACCTAGAGAAGACATGGAATGTGATGATCTTAAGGAACTTCCAGAACCAA CTCCAGTGAAAACTAGACTACCTCCTGAAATCTTTGGTGATGCTCTGATGGTTTTGGAGT TCCTTAATGCATTTGGGGAGCTTTTCGATCTTCAAGATGAGTTTCCTGAGGGAGTAACCC TAGAAGTGTTAGAGGAAGCTCTTGTAGGAAATGACAGTGAAGGCCCACTATGTGAATTGC TTTTTTTCTTCCTGACTGCCATCTTCCAGGCGATAGCTGAAGAAGAAGAGGAAGTAGCCA AAGAGCAAATAACTGATGCTGACACCAAAGATTTAACAGAGGCTTTGGATGAAGATGCAG ACCCTACAAAATCTGCACTGTCTGCAGTTGCATCTTTGGCAGCTGCATGGCCGCAGTTGC ATCAGGGCTGCAGTTTGAAAAGCTTGGATCTCGATAGCTGCACTCTTTCTGAAATCCTCA GACTACACATCTTAGCTTCAGGTGCTGATGTAACATCAGCAAATGCAAAGTACAGATATC AAAAACGAGGAGGATTTGATGCTACAGATGACGCCTGCATGGAGCTTCGTCTAAGCAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATTGTGGAAGAAGAGAGAATGAAGAAGAAAGAAGAAAAAGAGAGGCTTAAAATAGAAA GAGAAAAGGAAAGAGAGAAATTGCGTGAAGAAAAGAAAAAATATATGGAATACTTAAAAC AGTGGAGTAAACCTAGAGAAGACATGGAATGTGATGATCTTAAGGAACTTCCAGAACCAA CTCCAGTGAAAACTAGACTACCTCCTGAAATCTTTGGTGATGCTCTGATGGTTTTGGAGT TCCTTAATGCATTTGGGGAGCTTTTCGATCTTCAAGATGAGTTTCCTGAGGGAGTAACCC TAGAAGTGTTAGAGGAAGCTCTTGTAGGAAATGACAGTGAAGGCCCACTATGTGAATTGC TTTTTTTCTTCCTGACTGCCATCTTCCAGGCGATAGCTGAAGAAGAAGAGGAAGTAGCCA AAGAGCAAATAACTGATGCTGACACCAAAGATTTAACAGAGGCTTTGGATGAAGATGCAG ACCCTACAAAATCTGCACTGTCTGCAGTTGCATCTTTGGCAGCTGCATGGCCGCAGTTGC ATCAGGGCTGCAGTTTGAAAAGCTTGGATCTCGATAGCTGCACTCTTTCTGAAATCCTCA GACTACACATCTTAGCTTCAGGTGCTGATGTAACATCAGCAAATGCAAAGTACAGATATC AAAAACGAGGAGGATTTGATGCTACAGATGACGCCTGCATGGAGCTTCGTCTAAGCAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 546-718, + strand, RNAz p=0.961194 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 546-718, + strand, RNAz p=0.961194 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 302-450, gnl|bosTau2|chr21 (29564459-29564311) | |
| 302-450, gnl|Hg17|chr14 (34331880-34331732) | |
| 302-450, gnl|Mm7|chr12 (52896064-52895916) | |
| 546-718, gnl|bosTau2|chr21 (29559971-29559799) | |
| 546-718, gnl|canFam2|chr8 (16637870-16638100) | |
| 546-718, gnl|danRer3|chr17 (5548037-5548264) | |
| 546-718, gnl|echTel1|scaffold_280993 (32060-32289) | |
| 546-718, gnl|fr1|chrUn (93250954-93251183) | |
| 546-718, gnl|galGal2|chr5 (32870962-32871189) | |
| 546-718, gnl|hg17|chr14 (34324729-34324958) | |
| 546-718, gnl|Hg17|chr14 (34324959-34324787) | |
| 546-718, gnl|loxAfr1|scaffold_6709 (115800-115571) | |
| 546-718, gnl|mm7|chr12 (52891387-52891616) | |
| 546-718, gnl|Mm7|chr12 (52891617-52891445) | |
| 546-718, gnl|monDom2|scaffold_73 (3610910-3610666) | |
| 546-718, gnl|oryCun1|scaffold_173226 (7125-7354) | |
| 546-718, gnl|panTro1|chr15 (33475340-33475569) | |
| 546-718, gnl|rheMac2|chr7 (97743934-97744163) | |
| 546-718, gnl|rn3|chr6 (75270646-75270875) | |
| 546-718, gnl|tetNig1|chrUn_random (83000716-83000488) | |
| 546-718, gnl|xenTro1|scaffold_117 (879776-879548) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 302-450, gnl|bosTau2|chr21 (29564459-29564311) | |
| 302-450, gnl|Hg17|chr14 (34331880-34331732) | |
| 302-450, gnl|Mm7|chr12 (52896064-52895916) | |
| 546-718, gnl|bosTau2|chr21 (29559971-29559799) | |
| 546-718, gnl|canFam2|chr8 (16637870-16638100) | |
| 546-718, gnl|danRer3|chr17 (5548037-5548264) | |
| 546-718, gnl|echTel1|scaffold_280993 (32060-32289) | |
| 546-718, gnl|fr1|chrUn (93250954-93251183) | |
| 546-718, gnl|galGal2|chr5 (32870962-32871189) | |
| 546-718, gnl|hg17|chr14 (34324729-34324958) | |
| 546-718, gnl|Hg17|chr14 (34324959-34324787) | |
| 546-718, gnl|loxAfr1|scaffold_6709 (115800-115571) | |
| 546-718, gnl|mm7|chr12 (52891387-52891616) | |
| 546-718, gnl|Mm7|chr12 (52891617-52891445) | |
| 546-718, gnl|monDom2|scaffold_73 (3610910-3610666) | |
| 546-718, gnl|oryCun1|scaffold_173226 (7125-7354) | |
| 546-718, gnl|panTro1|chr15 (33475340-33475569) | |
| 546-718, gnl|rheMac2|chr7 (97743934-97744163) | |
| 546-718, gnl|rn3|chr6 (75270646-75270875) | |
| 546-718, gnl|tetNig1|chrUn_random (83000716-83000488) | |
| 546-718, gnl|xenTro1|scaffold_117 (879776-879548) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.385356) | |
| csk (0.140746) |