Non-Coding RNA Search

Ss1.1-rcsk21_e23.5

Sequence:


               
               GTGGTGGAGACGTCGAGCCACTTAGCTGTGTATATTAACTGGCATGATTTAAGGTATTGT
ACTTGTATAGGATCTTAGCAGTTCATCCGAAATACGTAAGGCTAGGCTTTACTGCCGTAT
GCTTACGGACATTGTATATTTGTATTTTAAGACCAAGTAGACCAAGTCAAAAGCTCTCTC
TGCGACCGGGAGACGTCCGAGAGGTTCCAGGAGTGCTAAGGGCGGCCTCCGTTCCTGTCC
TGTGTGCAGACAGCTGGGTTACACGGTGAAGGAAGACTGCCTAAAACCTGAGCAAAACAT
AGGTGACATACATTGTCAAGAAGGCCTTATCCCTTTCAATTGCGTGACAGATTGAAATGT
ATTGTTTACATTGGGGAATGTATCTCAGATTTTTAAACAGAAGAGTAATAAACAGACTGA
AAGAGGAATATTGAGATTTTTTTTTTTTTTACTTGTTCTAGGCAAGTAAATGAATTGAAC
TGTCTGAACTCTACAGCACTGGTTGTTTAGAGTGGCTAATGAAACCGAAACTTTGGAAGC
ATTTTTTTATTACATCTCCAGCCTGTTGCAGACGTGCCAGGCACCAGTAAACAATGTGTA
TGAAAGATAATTCTGTTTGTATGTATCCTTATCAAATATATTCTATAATGAAATAAAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTGGAGACGTCGAGCCACTTAGCTGTGTATATTAACTGGCATGATTTAAGGTATTGT
ACTTGTATAGGATCTTAGCAGTTCATCCGAAATACGTAAGGCTAGGCTTTACTGCCGTAT
GCTTACGGACATTGTATATTTGTATTTTAAGACCAAGTAGACCAAGTCAAAAGCTCTCTC
TGCGACCGGGAGACGTCCGAGAGGTTCCAGGAGTGCTAAGGGCGGCCTCCGTTCCTGTCC
TGTGTGCAGACAGCTGGGTTACACGGTGAAGGAAGACTGCCTAAAACCTGAGCAAAACAT
AGGTGACATACATTGTCAAGAAGGCCTTATCCCTTTCAATTGCGTGACAGATTGAAATGT
ATTGTTTACATTGGGGAATGTATCTCAGATTTTTAAACAGAAGAGTAATAAACAGACTGA
AAGAGGAATATTGAGATTTTTTTTTTTTTTACTTGTTCTAGGCAAGTAAATGAATTGAAC
TGTCTGAACTCTACAGCACTGGTTGTTTAGAGTGGCTAATGAAACCGAAACTTTGGAAGC
ATTTTTTTATTACATCTCCAGCCTGTTGCAGACGTGCCAGGCACCAGTAAACAATGTGTA
TGAAAGATAATTCTGTTTGTATGTATCCTTATCAAATATATTCTATAATGAAATAAAATC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-660, gnl|bosTau2|chr21 (42836202-42836863)
               

               
               1-660, gnl|Hg17|chr14 (99476949-99477617)
               

               
               1-660, gnl|Mm7|chr12 (106059818-106060453)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-660, gnl|bosTau2|chr21 (42836202-42836863)
               

               
               1-660, gnl|Hg17|chr14 (99476949-99477617)
               

               
               1-660, gnl|Mm7|chr12 (106059818-106060453)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               csk (0.422238)
               

               
               cut (0.339847)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mga (0.160205)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.422238)
               

               
               cut (0.339847)
               

               
               sme (0.305437)
               

               
               cte (0.29274)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               mga (0.160205)
               

               
               che (0.136314)
               

               
               ste (0.135208)
               

               
               ese (0.126502)
               

               
               eje (0.0988338)

	1-660, gnl\|bosTau2\|chr21 (42836202-42836863)
	1-660, gnl\|Hg17\|chr14 (99476949-99477617)
	1-660, gnl\|Mm7\|chr12 (106059818-106060453)

	csk (0.422238)
	cut (0.339847)
	sme (0.305437)
	cte (0.29274)
	spc (0.226732)
	nms (0.213858)
	mga (0.160205)
	che (0.136314)
	ste (0.135208)
	ese (0.126502)
	eje (0.0988338)