Non-Coding RNA Search

Ss1.1-rcsk21_g2.5

Sequence:


               
               GCAGTTTCTTGAGTGGCCATTTTCCTGGTTTAGCCCTAGCACTTGACTGTTGAGGGAGCT
CATAGTGCCGACTGGTGCCGATTGGGATCTGTCATCTTAGAATCTTAGGGTGCTAGATGG
GTCACATTGGAGCCAGTGGCAGAGAAGGCACCTATGAGTTTGACCCTTTTTATCATAAGC
CTCAGTGTTTGGAAAGTTGTTATCAGTGCTTTTAAAACAACGCTCCAAAACAAAAAGAAT
CAAACAAAAAAACCTCCTGTTCTTTCTCACCACTACAGAGAGAGTAGATTTCTCCCCTAG
AGAGCACAGCCTCCATTACTAAGGACAGCGACTGTGTGTCAGAGGTGGACTTTACCATTG
AGGGCCATATGGGAGCTGGACGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTTTCTTGAGTGGCCATTTTCCTGGTTTAGCCCTAGCACTTGACTGTTGAGGGAGCT
CATAGTGCCGACTGGTGCCGATTGGGATCTGTCATCTTAGAATCTTAGGGTGCTAGATGG
GTCACATTGGAGCCAGTGGCAGAGAAGGCACCTATGAGTTTGACCCTTTTTATCATAAGC
CTCAGTGTTTGGAAAGTTGTTATCAGTGCTTTTAAAACAACGCTCCAAAACAAAAAGAAT
CAAACAAAAAAACCTCCTGTTCTTTCTCACCACTACAGAGAGAGTAGATTTCTCCCCTAG
AGAGCACAGCCTCCATTACTAAGGACAGCGACTGTGTGTCAGAGGTGGACTTTACCATTG
AGGGCCATATGGGAGCTGGACGAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-379, gnl|bosTau2|chr10 (8818078-8817728)
               

               
               5-379, gnl|Hg17|chr15 (63524918-63524561)
               

               
               5-379, gnl|Mm7|chr9 (65111771-65112067)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-379, gnl|bosTau2|chr10 (8818078-8817728)
               

               
               5-379, gnl|Hg17|chr15 (63524918-63524561)
               

               
               5-379, gnl|Mm7|chr9 (65111771-65112067)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               csk (0.140746)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               csk (0.140746)

	5-379, gnl\|bosTau2\|chr10 (8818078-8817728)
	5-379, gnl\|Hg17\|chr15 (63524918-63524561)
	5-379, gnl\|Mm7\|chr9 (65111771-65112067)