Ss1.1-rcsk21_o7.5
|
AGGGATTGAACCTGAATCCTCATAGATGCCAGTCAGGTTTGTTACTGCTGAGCCACAGCA
GGAACTCCCAAAGCCTTGTCTTTTAATCCTAAAATTCCTTAAGACTTAATATTGTTTGAT
AGCTTTAAAGACTATTTTCAGAAAAAAAATTCTTTTGCATGTTATTCATATACAATTCTC
CAGTCTAAATGTGTTTTAAAGGAAAGCACTTATGGTTTTACAAATCTTTCTCAAAACTGC
TTGCGAAGTCGTGATTTTACTAAAAACCTTGAGATCTTCATTTTACAGGCAAACCTATCT
AAGCAGAGCAAACCAGACTTGAGGTTTTCCCTGTAGTTTGAAGAGCCCTACAGAATGACT
CCTGACAAAGTGCAACCTACAGCTGCCTGGAGAACAGTCAGTGTCACATCAAAGTTTGCC
ATGTGTTTAATGAAGTACTTTTTTGTTAGCATTTGACAACCCTGGTGTTGTTTATCTAGA
ATTAAAGATTAGGAGACTCTGAGCTGAGCAGTAAAGGTAAGGGAGAGCTCAGTGTACAAG
GCCAACTTTTGTTGTCTGACTGGAGGTGATGCCAAGACTACTTGAGCCAGCACATTATTC
TTTGCCTTAAAGGTTGTTAAGGTTTCATTGTGCTTAAAGTCTGAATTAATAATTTTGATA
ATTTGATTATTTTGATAAATTCAG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGGGATTGAACCTGAATCCTCATAGATGCCAGTCAGGTTTGTTACTGCTGAGCCACAGCA
GGAACTCCCAAAGCCTTGTCTTTTAATCCTAAAATTCCTTAAGACTTAATATTGTTTGAT
AGCTTTAAAGACTATTTTCAGAAAAAAAATTCTTTTGCATGTTATTCATATACAATTCTC
CAGTCTAAATGTGTTTTAAAGGAAAGCACTTATGGTTTTACAAATCTTTCTCAAAACTGC
TTGCGAAGTCGTGATTTTACTAAAAACCTTGAGATCTTCATTTTACAGGCAAACCTATCT
AAGCAGAGCAAACCAGACTTGAGGTTTTCCCTGTAGTTTGAAGAGCCCTACAGAATGACT
CCTGACAAAGTGCAACCTACAGCTGCCTGGAGAACAGTCAGTGTCACATCAAAGTTTGCC
ATGTGTTTAATGAAGTACTTTTTTGTTAGCATTTGACAACCCTGGTGTTGTTTATCTAGA
ATTAAAGATTAGGAGACTCTGAGCTGAGCAGTAAAGGTAAGGGAGAGCTCAGTGTACAAG
GCCAACTTTTGTTGTCTGACTGGAGGTGATGCCAAGACTACTTGAGCCAGCACATTATTC
TTTGCCTTAAAGGTTGTTAAGGTTTCATTGTGCTTAAAGTCTGAATTAATAATTTTGATA
ATTTGATTATTTTGATAAATTCAG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
312-446, - strand, RNAmicro p=0.993781 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
312-446, - strand, RNAmicro p=0.993781 |
|
78-646, gnl|bosTau2|chr12 (33236270-33235680) |
|
78-646, gnl|canFam2|chr22 (45429380-45429710) |
|
78-646, gnl|dasNov1|scaffold_16352 (76227-75869) |
|
78-646, gnl|hg17|chr13 (90803910-90804300) |
|
78-646, gnl|Hg17|chr13 (90803939-90804536) |
|
78-646, gnl|loxAfr1|scaffold_59156 (12763-13164) |
|
78-646, gnl|mm7|chr14 (109451891-109452209) |
|
78-646, gnl|oryCun1|scaffold_204731 (16871-17232) |
|
78-646, gnl|panTro1|chr14 (73775493-73775884) |
|
78-646, gnl|rheMac2|chr17 (71818339-71818734) |
|
78-646, gnl|rn3|chr15 (99871678-99871968) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
78-646, gnl|bosTau2|chr12 (33236270-33235680) |
|
78-646, gnl|canFam2|chr22 (45429380-45429710) |
|
78-646, gnl|dasNov1|scaffold_16352 (76227-75869) |
|
78-646, gnl|hg17|chr13 (90803910-90804300) |
|
78-646, gnl|Hg17|chr13 (90803939-90804536) |
|
78-646, gnl|loxAfr1|scaffold_59156 (12763-13164) |
|
78-646, gnl|mm7|chr14 (109451891-109452209) |
|
78-646, gnl|oryCun1|scaffold_204731 (16871-17232) |
|
78-646, gnl|panTro1|chr14 (73775493-73775884) |
|
78-646, gnl|rheMac2|chr17 (71818339-71818734) |
|
78-646, gnl|rn3|chr15 (99871678-99871968) |
|
liv (0.146284) |
|
csk (0.140746) |
|
kid (0.129735) |
|
thg (0.126791) |
|
liv (0.146284) |
|
csk (0.140746) |
|
kid (0.129735) |
|
thg (0.126791) |
