Non-Coding RNA Search

Ss1.1-rcsk22_m3.5

Sequence:


               
               AGTCCAAGAGGGAGGGAGGAACGGACGGAGAGAGAGAGAGGAGAGGGAGAGACCAGGGCC
AGAGCTGATTGAGCCTGGGGCGCAGCGCGGGAACCGGGTTTGCTGCACGTCGCGTCGCGC
CCCGCCTGTTGTGCCGGGAGACCGGAGTAAGCGCCAACGCCGCACGGGCAGTGGGGGCAC
TGGCACAGAGACTGGCAGGTGCCACCGCAGGGTCCCCTTTCCCGCCCACCACCTCCTTCC
CTTGCCGCCCACTCTTCCTGCGTTCTCAGTGCGGATTTGCGGGGTGCGTCCTGGAGCTGC
TGGCGGTTCAGGAACGAAGCCCAAGGTCGGGGAAGCCATAGGGCGGACAGAGTCACTCCT
CTTTCTGTTCTGACTTTCCACTGCCTCTGGATGCCCCAGTCACAGTGCCCCTGATCCCAT
AGTAGTTTCTGTCCGTCCGTCCCTGTACGAAGAACAGCCCCTGGGAGGCGATCACCATGT
TCTGTGCGAAGCTGAAGGACCTGCATATCACAGGGGACTGCCCCTTCTCCCTCCTGGCCC
CGGGGCAGGTCCCTCAAGAGCCAGCGGAGGAGGTAGCAGGGAGCTCCCAGACCACAGCCC
TGCCTCTGGGTCAGAGTGTCCCGGAGAAGAACCCACGAGGACGTCTTCCTCAGAGGAAGA
CCAGCCGCAGCCGGGTCTATCTTCACACTTTGGCAGAGAGTATTTGCAAACTGATTTTCC
CAGAGGTAAGTGCCTGCCCTTTCACGATTGTACTGATATTTTGAAAATGGTGGAAGAATA
TTTTCTTAAGGAACATGTGAACACTTGCTTTCTCACTTTCCAGGCTATAGTAGATATATA
ATATTTTCTGGAAACATTTAAAAACATGTTATTTTCTTTTTGGCTGCACCCGCATCATTA
GGAAATGAGGGATCAAACATGTGCTGCAGCAGCCACCCAAACTCCTGGGGTGATGACGCT
GGATCCTTAACCCACTCCTAAGTCCTCAGGGAACTCCATAAAAACATTCTTTAAAGCAAT
CATATTCTTTAATTGTGTTGAATCTTAAAATGCTTAAGATCTTGCATTCTTTCCCAAAGC
ATCCTGAAGTCTGATGAGCTTTATGACTTTATGACTTAACCCCTCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCAAGAGGGAGGGAGGAACGGACGGAGAGAGAGAGAGGAGAGGGAGAGACCAGGGCC
AGAGCTGATTGAGCCTGGGGCGCAGCGCGGGAACCGGGTTTGCTGCACGTCGCGTCGCGC
CCCGCCTGTTGTGCCGGGAGACCGGAGTAAGCGCCAACGCCGCACGGGCAGTGGGGGCAC
TGGCACAGAGACTGGCAGGTGCCACCGCAGGGTCCCCTTTCCCGCCCACCACCTCCTTCC
CTTGCCGCCCACTCTTCCTGCGTTCTCAGTGCGGATTTGCGGGGTGCGTCCTGGAGCTGC
TGGCGGTTCAGGAACGAAGCCCAAGGTCGGGGAAGCCATAGGGCGGACAGAGTCACTCCT
CTTTCTGTTCTGACTTTCCACTGCCTCTGGATGCCCCAGTCACAGTGCCCCTGATCCCAT
AGTAGTTTCTGTCCGTCCGTCCCTGTACGAAGAACAGCCCCTGGGAGGCGATCACCATGT
TCTGTGCGAAGCTGAAGGACCTGCATATCACAGGGGACTGCCCCTTCTCCCTCCTGGCCC
CGGGGCAGGTCCCTCAAGAGCCAGCGGAGGAGGTAGCAGGGAGCTCCCAGACCACAGCCC
TGCCTCTGGGTCAGAGTGTCCCGGAGAAGAACCCACGAGGACGTCTTCCTCAGAGGAAGA
CCAGCCGCAGCCGGGTCTATCTTCACACTTTGGCAGAGAGTATTTGCAAACTGATTTTCC
CAGAGGTAAGTGCCTGCCCTTTCACGATTGTACTGATATTTTGAAAATGGTGGAAGAATA
TTTTCTTAAGGAACATGTGAACACTTGCTTTCTCACTTTCCAGGCTATAGTAGATATATA
ATATTTTCTGGAAACATTTAAAAACATGTTATTTTCTTTTTGGCTGCACCCGCATCATTA
GGAAATGAGGGATCAAACATGTGCTGCAGCAGCCACCCAAACTCCTGGGGTGATGACGCT
GGATCCTTAACCCACTCCTAAGTCCTCAGGGAACTCCATAAAAACATTCTTTAAAGCAAT
CATATTCTTTAATTGTGTTGAATCTTAAAATGCTTAAGATCTTGCATTCTTTCCCAAAGC
ATCCTGAAGTCTGATGAGCTTTATGACTTTATGACTTAACCCCTCTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37194887|gb|AAH12627.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37194887|gb|AAH12627.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               336-870, gnl|bosTau2|chr7 (23613846-23613296)
               

               
               336-870, gnl|Hg17|chr4 (156975459-156976026)
               

               
               336-870, gnl|Mm7|chr3 (82224182-82223632)
               


               
               999-1110, gnl|bosTau2|chr7 (23613307-23613195)
               

               
               999-1110, gnl|Hg17|chr4 (156976015-156976127)
               

               
               999-1110, gnl|Mm7|chr3 (82223646-82223537)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               336-870, gnl|bosTau2|chr7 (23613846-23613296)
               

               
               336-870, gnl|Hg17|chr4 (156975459-156976026)
               

               
               336-870, gnl|Mm7|chr3 (82224182-82223632)
               


               
               999-1110, gnl|bosTau2|chr7 (23613307-23613195)
               

               
               999-1110, gnl|Hg17|chr4 (156976015-156976127)
               

               
               999-1110, gnl|Mm7|chr3 (82223646-82223537)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	336-870, gnl\|bosTau2\|chr7 (23613846-23613296)
	336-870, gnl\|Hg17\|chr4 (156975459-156976026)
	336-870, gnl\|Mm7\|chr3 (82224182-82223632)

	999-1110, gnl\|bosTau2\|chr7 (23613307-23613195)
	999-1110, gnl\|Hg17\|chr4 (156976015-156976127)
	999-1110, gnl\|Mm7\|chr3 (82223646-82223537)