Non-Coding RNA Search

Ss1.1-rcsk28_p19.5

Sequence:


               
               CCTTTGTAAGAGCCCCATACTGTTAAAAACTGTGAGAGATTTCCTGAGCCAGCAGTGGGC
ATGAGGTGTGAGAGCTGCGGAGGGTGAAGACTTGGTCCAAACATCATCTGTGATGTGTAT
TTTTTACATAAAAATTGTACTGCGCTGCCTGGGTGAGCTGCAGTCACTGACATTTCCACA
GGTCACTGCCATTTTAGTAAGGGACAGCAGGGATGCTGGGCATTATAGAACATTCTCGTT
TAGCCTATCAGAGTTTACTTTGTGAAAAGTGCTGAAACGTCACTGTGGAGAATCAGAATT
TGGTAAAGATTGGATCCCATCTAAAAATGTATAGTTACCAAACATTCTGGGGACATTTGT
AGATAAGATGGTCTTTGATTTGGACCTAGACAGCAGTATAAGAAAGGGGCTCCAATGTAA
TTAAATAATTTGTATTTCAGTTTACTTAATCTAAATGGCATTAAAAAGCTCCCAGCTGTT
TTCTAGCTTTCCTAATAGCATTGGGGAAAGTCGTAGAATGCCACTCAGTCTGCTATAAAA
TAGTAAGATTGGGCACTCATGTAGTCTTTGGAAATAGACACTTTTGCCCTAACATAGTCA
TACATTTTCCCTCCCAATTCCCAGGATACTTGACTGGATTTTTAGCTAACAAAAGTGAAA
CAAAATCAAAGAATGTTGTAAAAATGTTCAAATCCATTAAGACGCTATTTTTTCTAGGAG
GAATTTTACAACTTACTTTCCATTGGCTTTGTGCACCCCACCGCTGGGTTCACTGGACAG
GGAAATCTTTAGGTTGGAAGGGTCCATGTTCCAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTGTAAGAGCCCCATACTGTTAAAAACTGTGAGAGATTTCCTGAGCCAGCAGTGGGC
ATGAGGTGTGAGAGCTGCGGAGGGTGAAGACTTGGTCCAAACATCATCTGTGATGTGTAT
TTTTTACATAAAAATTGTACTGCGCTGCCTGGGTGAGCTGCAGTCACTGACATTTCCACA
GGTCACTGCCATTTTAGTAAGGGACAGCAGGGATGCTGGGCATTATAGAACATTCTCGTT
TAGCCTATCAGAGTTTACTTTGTGAAAAGTGCTGAAACGTCACTGTGGAGAATCAGAATT
TGGTAAAGATTGGATCCCATCTAAAAATGTATAGTTACCAAACATTCTGGGGACATTTGT
AGATAAGATGGTCTTTGATTTGGACCTAGACAGCAGTATAAGAAAGGGGCTCCAATGTAA
TTAAATAATTTGTATTTCAGTTTACTTAATCTAAATGGCATTAAAAAGCTCCCAGCTGTT
TTCTAGCTTTCCTAATAGCATTGGGGAAAGTCGTAGAATGCCACTCAGTCTGCTATAAAA
TAGTAAGATTGGGCACTCATGTAGTCTTTGGAAATAGACACTTTTGCCCTAACATAGTCA
TACATTTTCCCTCCCAATTCCCAGGATACTTGACTGGATTTTTAGCTAACAAAAGTGAAA
CAAAATCAAAGAATGTTGTAAAAATGTTCAAATCCATTAAGACGCTATTTTTTCTAGGAG
GAATTTTACAACTTACTTTCCATTGGCTTTGTGCACCCCACCGCTGGGTTCACTGGACAG
GGAAATCTTTAGGTTGGAAGGGTCCATGTTCCAGAT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               35-816, gnl|bosTau2|chr10 (29316465-29317245)
               

               
               35-816, gnl|Hg17|chr14 (50440805-50441931)
               

               
               35-816, gnl|Mm7|chr12 (68124169-68132055)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-816, gnl|bosTau2|chr10 (29316465-29317245)
               

               
               35-816, gnl|Hg17|chr14 (50440805-50441931)
               

               
               35-816, gnl|Mm7|chr12 (68124169-68132055)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.140746)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)

	35-816, gnl\|bosTau2\|chr10 (29316465-29317245)
	35-816, gnl\|Hg17\|chr14 (50440805-50441931)
	35-816, gnl\|Mm7\|chr12 (68124169-68132055)