Non-Coding RNA Search

Ss1.1-rcsk29_c13.5.5

Sequence:


               
               AAATTGATTTGTTTAAATAAATTCAGCAAATGGATAGCATTGTTTTTATTTGCTTCAATA
TCGGGGTAAATATTAAGCTAAAGTGCCAGGAGTGGATTTCTTCAAATGACTGTAATCTGT
TAGCTTTATATGGATGCTTCCTAAAGAGATCCAAGGATGCCTACATTGCAGCACTTTGTA
AAGATATCACAAAGGAGGCTTGAATTAGGGAGTCTGTGTAATTTTAGAATGTGCCAAAAG
ATCTGTGCTCAAAAAATTTGATTGAACTCTCTCAACTCTACCTCACCATTTCTTTATCTT
AGAGTTGTGCTGGCTTTGTCACATGTGGGATTTTATTTCTCCAGCTTAGTAGCTATCACT
CACTCAACTGCCGCTGCCAGGCGTTAGAGACACCGTCTTTTGAGGGGAGATTGAGTGTGG
AGATGGAGAGGTGCGCTCTTAAATCGGGGTGGATCCAGGATGGAGATACCTGTCCCTTCT
CTCTGGCTCAAGAGCCGGGACATGGATTTTCTGTTTTGAGAGGAGGCAGCTATGAATGAT
AAAATTAATAAGTTCATTCTCTTACACAGGCATGAGGTGCAGACTCTTGCACAGTTAATC
CTTGTTCATTGCTCTTGTTCCCTTAAGAACTTTATGTGACATGAGAGCAGTTTCTGGCGT
CTGAACAGAGGAACGGTTGTCCAGCCTCAACTCAGAAGGCAGTAAAGTCAAGGTAGCAAT
TTGGGGAGGAGGGGAGGGGGGAGCCTGTTGTCCTTTGGAGGCGGGGACGAGGTGCCCTCC
CAAACTGCTAAGACTAGTGATCCCTTCAGACCTGGAGGAGACCCTTGTTCTGACTAGCAA
ACAAGGCCTCAGAGAAACTCTTAAAACTCTCCCTCGTCATGACCTGTCTCCACATACTCA
CTGAAAATCCTTCCCTGTTCTGGAGCTGGACGTAGCGGGTTAGGATGTCCCCAGACGAAT
CCTACCTCTCTATACCCTGAATTGAGCAAAACAGTAGTTGAGAGAGTCCAAAAATCCAGG
ATTGGAATAAAATGTTGATGTTATTGACCATGTTTACTCTGTGCATGCGTTGTCTTGGGC
CGGCAGTGGGAGTAACTCATCGGAATCTAATGGTATGATTTCGTAGATTAATCCAGTTTG
CACTTGGGTTAAAGATATTGAAGGGCAATATTTAACTACAGAGTTTAGTTTTTCTTAATT
AAGAACAGTCCTCTATTAACATAGTGTGAAATATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTGATTTGTTTAAATAAATTCAGCAAATGGATAGCATTGTTTTTATTTGCTTCAATA
TCGGGGTAAATATTAAGCTAAAGTGCCAGGAGTGGATTTCTTCAAATGACTGTAATCTGT
TAGCTTTATATGGATGCTTCCTAAAGAGATCCAAGGATGCCTACATTGCAGCACTTTGTA
AAGATATCACAAAGGAGGCTTGAATTAGGGAGTCTGTGTAATTTTAGAATGTGCCAAAAG
ATCTGTGCTCAAAAAATTTGATTGAACTCTCTCAACTCTACCTCACCATTTCTTTATCTT
AGAGTTGTGCTGGCTTTGTCACATGTGGGATTTTATTTCTCCAGCTTAGTAGCTATCACT
CACTCAACTGCCGCTGCCAGGCGTTAGAGACACCGTCTTTTGAGGGGAGATTGAGTGTGG
AGATGGAGAGGTGCGCTCTTAAATCGGGGTGGATCCAGGATGGAGATACCTGTCCCTTCT
CTCTGGCTCAAGAGCCGGGACATGGATTTTCTGTTTTGAGAGGAGGCAGCTATGAATGAT
AAAATTAATAAGTTCATTCTCTTACACAGGCATGAGGTGCAGACTCTTGCACAGTTAATC
CTTGTTCATTGCTCTTGTTCCCTTAAGAACTTTATGTGACATGAGAGCAGTTTCTGGCGT
CTGAACAGAGGAACGGTTGTCCAGCCTCAACTCAGAAGGCAGTAAAGTCAAGGTAGCAAT
TTGGGGAGGAGGGGAGGGGGGAGCCTGTTGTCCTTTGGAGGCGGGGACGAGGTGCCCTCC
CAAACTGCTAAGACTAGTGATCCCTTCAGACCTGGAGGAGACCCTTGTTCTGACTAGCAA
ACAAGGCCTCAGAGAAACTCTTAAAACTCTCCCTCGTCATGACCTGTCTCCACATACTCA
CTGAAAATCCTTCCCTGTTCTGGAGCTGGACGTAGCGGGTTAGGATGTCCCCAGACGAAT
CCTACCTCTCTATACCCTGAATTGAGCAAAACAGTAGTTGAGAGAGTCCAAAAATCCAGG
ATTGGAATAAAATGTTGATGTTATTGACCATGTTTACTCTGTGCATGCGTTGTCTTGGGC
CGGCAGTGGGAGTAACTCATCGGAATCTAATGGTATGATTTCGTAGATTAATCCAGTTTG
CACTTGGGTTAAAGATATTGAAGGGCAATATTTAACTACAGAGTTTAGTTTTTCTTAATT
AAGAACAGTCCTCTATTAACATAGTGTGAAATATCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               755-892, + strand, RNAz p=0.9921

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               755-892, + strand, RNAz p=0.9921

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1236, gnl|bosTau2|chr14 (40077198-40075955)
               

               
               1-1236, gnl|Hg17|chr8 (98807685-98809504)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1236, gnl|bosTau2|chr14 (40077198-40075955)
               

               
               1-1236, gnl|Hg17|chr8 (98807685-98809504)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               vin (0.332557)
               

               
               lyg (0.266205)
               

               
               aor (0.195274)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               lyg (0.266205)
               

               
               aor (0.195274)
               

               
               cje (0.165235)
               

               
               fco (0.157208)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-1236, gnl\|bosTau2\|chr14 (40077198-40075955)
	1-1236, gnl\|Hg17\|chr8 (98807685-98809504)

	vin (0.332557)
	lyg (0.266205)
	aor (0.195274)
	cje (0.165235)
	fco (0.157208)
	liv (0.146284)
	lin (0.145603)
	lnt (0.142308)
	csk (0.140746)
	eje (0.0988338)
	ldo (0.0970026)