Non-Coding RNA Search

Ss1.1-rcsk29_e15.5

Sequence:


               
               TGGTTTTTTTTAAAGCAACGTTAAGGCGGCGCCGGCGGCAGCTACGGCGGCGGCAGTTCC
GGCGGCGGCGGCGGCTCCAGCGGAGGCCTCAAGTCCTCATCTTCAGTGTCCATTGGAGAG
CAATCATCTAAGGGACCAAGATACTAACAAAACCAGAGTAATCAAGACAATTATTGAGGA
GGTGGCGCCTGATGGTAGAGTCCTTTCGTCTATGGTTGAATCAGAAACCAAGAAACACTA
CTACTAAACCGCATCAAGAGGAAAGAGTCTCCCCTCACACGGGCCATTATGCACTGATGC
ATGAAAAAAATCAAGAAAACACTTCAGTCTTAATGGTCTATGGAAATAGGGTCTCTCCTT
GAAAATAAGGTGTCTAAACGGTGTTTCGTGGTTTCTGTATTTCTTCTTTTCACTTTACCA
GAAAGTGTTCTTTAATGGAAAAAAAAAAAAAAAAAACCTTTCTATTCTCATTTACTAATG
AATTTCAATAAACTTTCTCACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTTTTTTTTAAAGCAACGTTAAGGCGGCGCCGGCGGCAGCTACGGCGGCGGCAGTTCC
GGCGGCGGCGGCGGCTCCAGCGGAGGCCTCAAGTCCTCATCTTCAGTGTCCATTGGAGAG
CAATCATCTAAGGGACCAAGATACTAACAAAACCAGAGTAATCAAGACAATTATTGAGGA
GGTGGCGCCTGATGGTAGAGTCCTTTCGTCTATGGTTGAATCAGAAACCAAGAAACACTA
CTACTAAACCGCATCAAGAGGAAAGAGTCTCCCCTCACACGGGCCATTATGCACTGATGC
ATGAAAAAAATCAAGAAAACACTTCAGTCTTAATGGTCTATGGAAATAGGGTCTCTCCTT
GAAAATAAGGTGTCTAAACGGTGTTTCGTGGTTTCTGTATTTCTTCTTTTCACTTTACCA
GAAAGTGTTCTTTAATGGAAAAAAAAAAAAAAAAAACCTTTCTATTCTCATTTACTAATG
AATTTCAATAAACTTTCTCACTGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               258-371, - strand, RNAz p=0.977457

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-371, - strand, RNAz p=0.977457

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               270-407, - strand, RNAmicro p=0.995899

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               270-407, - strand, RNAmicro p=0.995899

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               139-504, gnl|bosTau2|chr19 (33818586-33818953)
               

               
               139-504, gnl|Hg17|chr17 (36228262-36227904)
               

               
               139-504, gnl|Mm7|chr11 (99494677-99494308)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               139-504, gnl|bosTau2|chr19 (33818586-33818953)
               

               
               139-504, gnl|Hg17|chr17 (36228262-36227904)
               

               
               139-504, gnl|Mm7|chr11 (99494677-99494308)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               csk (5.48909)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (5.48909)
               

               
               fce (0.271592)
               

               
               col (0.195008)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               thg (0.126791)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	139-504, gnl\|bosTau2\|chr19 (33818586-33818953)
	139-504, gnl\|Hg17\|chr17 (36228262-36227904)
	139-504, gnl\|Mm7\|chr11 (99494677-99494308)

	csk (5.48909)
	fce (0.271592)
	col (0.195008)
	nep (0.183925)
	fbs (0.175346)
	eye (0.170503)
	fhi (0.169578)
	fat (0.147427)
	ski (0.146735)
	lnt (0.142308)
	thg (0.126791)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)
	eje (0.0988338)