Non-Coding RNA Search

Ss1.1-rcsk30_m5.5

Sequence:


               
               AAACTTTTAATGAAAAGGTTGTGATACGGAAGAGCTGATGAGGAGAGAAAAGGGATTTTA
AGATCCAAACAGAAGTAAGAGGCGGAGGACTCATGCTATGGACTGGAGACAGCTCAATAC
CTAGAGAAGCGTTTTGAGGTCGTTCCTCCCTTTGCCTCGCTGCTCCTTCAGGAGTCACGG
CTCCAGTTTTGCGTCTGTGCTTCAGACCCTTCCATCAGGCCAATGGGAACGCTGCCCAGA
TCGCCAGGCAGATAGACCAACCAACAAGAGCTTTTATGTCTATTGCAAAGGCCCCTGTCA
AAGAGTGCAGCCAGGAAAGCTCCGCGTGCGGTGCAGCACCTGCCAACAGGCAACCCTCAC
CTTGACTCAGGGTCCTTCTTGCTGGGACGATGTCTTGATCCCAAACCGGATGAGTGGTGA
GTGCCAGTCTCCAAACTGCCCTGGGACCACAGCAAAAACAAAGACTGACCTGCAAGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTTTAATGAAAAGGTTGTGATACGGAAGAGCTGATGAGGAGAGAAAAGGGATTTTA
AGATCCAAACAGAAGTAAGAGGCGGAGGACTCATGCTATGGACTGGAGACAGCTCAATAC
CTAGAGAAGCGTTTTGAGGTCGTTCCTCCCTTTGCCTCGCTGCTCCTTCAGGAGTCACGG
CTCCAGTTTTGCGTCTGTGCTTCAGACCCTTCCATCAGGCCAATGGGAACGCTGCCCAGA
TCGCCAGGCAGATAGACCAACCAACAAGAGCTTTTATGTCTATTGCAAAGGCCCCTGTCA
AAGAGTGCAGCCAGGAAAGCTCCGCGTGCGGTGCAGCACCTGCCAACAGGCAACCCTCAC
CTTGACTCAGGGTCCTTCTTGCTGGGACGATGTCTTGATCCCAAACCGGATGAGTGGTGA
GTGCCAGTCTCCAAACTGCCCTGGGACCACAGCAAAAACAAAGACTGACCTGCAAGAGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|38699387|gb|AAR27057.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|38699387|gb|AAR27057.1|

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               248-371, gnl|bosTau2|chr9 (60723511-60723388)
               

               
               248-371, gnl|canFam2|chr1 (53749478-53750068)
               

               
               248-371, gnl|dasNov1|scaffold_11538 (7606-6993)
               

               
               248-371, gnl|echTel1|scaffold_311456 (18270-17706)
               

               
               248-371, gnl|hg17|chr6 (162592483-162593080)
               

               
               248-371, gnl|Hg17|chr6 (162592696-162592573)
               

               
               248-371, gnl|mm7|chr17 (10021833-10021207)
               

               
               248-371, gnl|Mm7|chr17 (10021612-10021735)
               

               
               248-371, gnl|monDom2|scaffold_0 (40924177-40923535)
               

               
               248-371, gnl|oryCun1|scaffold_181668 (40086-39493)
               

               
               248-371, gnl|panTro1|chr5 (166880046-166880641)
               

               
               248-371, gnl|rheMac2|chr4 (159011536-159012133)
               

               
               248-371, gnl|rn3|chr1 (43915111-43915693)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               248-371, gnl|bosTau2|chr9 (60723511-60723388)
               

               
               248-371, gnl|canFam2|chr1 (53749478-53750068)
               

               
               248-371, gnl|dasNov1|scaffold_11538 (7606-6993)
               

               
               248-371, gnl|echTel1|scaffold_311456 (18270-17706)
               

               
               248-371, gnl|hg17|chr6 (162592483-162593080)
               

               
               248-371, gnl|Hg17|chr6 (162592696-162592573)
               

               
               248-371, gnl|mm7|chr17 (10021833-10021207)
               

               
               248-371, gnl|Mm7|chr17 (10021612-10021735)
               

               
               248-371, gnl|monDom2|scaffold_0 (40924177-40923535)
               

               
               248-371, gnl|oryCun1|scaffold_181668 (40086-39493)
               

               
               248-371, gnl|panTro1|chr5 (166880046-166880641)
               

               
               248-371, gnl|rheMac2|chr4 (159011536-159012133)
               

               
               248-371, gnl|rn3|chr1 (43915111-43915693)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csk (0.281492)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.281492)

	248-371, gnl\|bosTau2\|chr9 (60723511-60723388)
	248-371, gnl\|canFam2\|chr1 (53749478-53750068)
	248-371, gnl\|dasNov1\|scaffold_11538 (7606-6993)
	248-371, gnl\|echTel1\|scaffold_311456 (18270-17706)
	248-371, gnl\|hg17\|chr6 (162592483-162593080)
	248-371, gnl\|Hg17\|chr6 (162592696-162592573)
	248-371, gnl\|mm7\|chr17 (10021833-10021207)
	248-371, gnl\|Mm7\|chr17 (10021612-10021735)
	248-371, gnl\|monDom2\|scaffold_0 (40924177-40923535)
	248-371, gnl\|oryCun1\|scaffold_181668 (40086-39493)
	248-371, gnl\|panTro1\|chr5 (166880046-166880641)
	248-371, gnl\|rheMac2\|chr4 (159011536-159012133)
	248-371, gnl\|rn3\|chr1 (43915111-43915693)