Non-Coding RNA Search

Ss1.1-rcsp04b_m15.5

Sequence:


               
               GCACAGAGTGATCGCAAAACATTCCTAGGAGAGTGTCTGTTTGCATGATGTGTCTAAACA
GTTTCAGGAAAATGAAATATTTTTTAAAATGCAGGTTTGGGCAAAGTAAGTATTGAATTT
ATGCATTTAAAACATTCACTTTTAGTCGTTTGTGTTTCTAATACGATGGGAGAAAATGCA
GTGTGTTTTGGTTCAGCTTCTTTATTTACTGGGTTTATGTATAAAAGATTTTGGAAAGAC
ATTTGTTACTTTGGTGTAAGAGAAAATCTTTGCCCCCTTTCCCTGAATGTAACTATCTTA
TATGTTTACATAAGAAATAATAAACTGGAGATGGGAATGGAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACAGAGTGATCGCAAAACATTCCTAGGAGAGTGTCTGTTTGCATGATGTGTCTAAACA
GTTTCAGGAAAATGAAATATTTTTTAAAATGCAGGTTTGGGCAAAGTAAGTATTGAATTT
ATGCATTTAAAACATTCACTTTTAGTCGTTTGTGTTTCTAATACGATGGGAGAAAATGCA
GTGTGTTTTGGTTCAGCTTCTTTATTTACTGGGTTTATGTATAAAAGATTTTGGAAAGAC
ATTTGTTACTTTGGTGTAAGAGAAAATCTTTGCCCCCTTTCCCTGAATGTAACTATCTTA
TATGTTTACATAAGAAATAATAAACTGGAGATGGGAATGGAAAAAAAA

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-340, gnl|bosTau2|chr11 (75845504-75845156)
               

               
               1-340, gnl|canFam2|chr9 (63221126-63220810)
               

               
               1-340, gnl|echTel1|scaffold_267596 (8062-8368)
               

               
               1-340, gnl|hg17|chr9 (122749842-122750164)
               

               
               1-340, gnl|Hg17|chr9 (122750221-122749890)
               

               
               1-340, gnl|loxAfr1|scaffold_56891 (4143-3833)
               

               
               1-340, gnl|mm7|chr2 (37432768-37433069)
               

               
               1-340, gnl|Mm7|chr2 (37433293-37432815)
               

               
               1-340, gnl|monDom2|scaffold_38 (16402757-16403192)
               

               
               1-340, gnl|oryCun1|scaffold_208907 (80523-80205)
               

               
               1-340, gnl|panTro1|chr11 (107452609-107452930)
               

               
               1-340, gnl|rn3|chr3 (17082288-17082599)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-340, gnl|bosTau2|chr11 (75845504-75845156)
               

               
               1-340, gnl|canFam2|chr9 (63221126-63220810)
               

               
               1-340, gnl|echTel1|scaffold_267596 (8062-8368)
               

               
               1-340, gnl|hg17|chr9 (122749842-122750164)
               

               
               1-340, gnl|Hg17|chr9 (122750221-122749890)
               

               
               1-340, gnl|loxAfr1|scaffold_56891 (4143-3833)
               

               
               1-340, gnl|mm7|chr2 (37432768-37433069)
               

               
               1-340, gnl|Mm7|chr2 (37433293-37432815)
               

               
               1-340, gnl|monDom2|scaffold_38 (16402757-16403192)
               

               
               1-340, gnl|oryCun1|scaffold_208907 (80523-80205)
               

               
               1-340, gnl|panTro1|chr11 (107452609-107452930)
               

               
               1-340, gnl|rn3|chr3 (17082288-17082599)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fhi (0.169578)
               

               
               csp (0.161186)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.169578)
               

               
               csp (0.161186)

	1-340, gnl\|bosTau2\|chr11 (75845504-75845156)
	1-340, gnl\|canFam2\|chr9 (63221126-63220810)
	1-340, gnl\|echTel1\|scaffold_267596 (8062-8368)
	1-340, gnl\|hg17\|chr9 (122749842-122750164)
	1-340, gnl\|Hg17\|chr9 (122750221-122749890)
	1-340, gnl\|loxAfr1\|scaffold_56891 (4143-3833)
	1-340, gnl\|mm7\|chr2 (37432768-37433069)
	1-340, gnl\|Mm7\|chr2 (37433293-37432815)
	1-340, gnl\|monDom2\|scaffold_38 (16402757-16403192)
	1-340, gnl\|oryCun1\|scaffold_208907 (80523-80205)
	1-340, gnl\|panTro1\|chr11 (107452609-107452930)
	1-340, gnl\|rn3\|chr3 (17082288-17082599)