Ss1.1-rcsp06b_k12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCCCGGGCACCGGAAGGTGCAGGGGCAGAGCCTCGGACAGACCCACCCTCTCTGCCCCT CTTGTGTCTGGCCGCGAGGGCGCCCATTCCTCTTTGGACCCACCCATTAAATCGGTTTCA GGATCTTCGACTCTGGGTTGGCTGGAGGCCTCCTGATGCAGTGATGCAGTCTGAATCCAG CCGGTGTGAAGAGGAACCGCCTTCCCTTTTGTGGGGTTTGGATCCAGTGTTTCTAGCCTT TGCCAAACTCTACATTAGGGATATCCTGGACTTGAAAGAGTCCCGCCAGGTGCCAGGTGT ATTTTTTTACAACGGGCATCCAATAAAACAGGTAGATATCTTGGGAACTGTAATTGGAGT GAGAGAAAGAGATGCTTTCTACAGTTATGGAGTGGATGATAGCACTGGAGTTATCAACTG CATCTGCTGGAAAAAGTTGAATAATACCGACTCCTCATCAGCTACAGCTGCTACAAATGC AAGAGAGCTGAGCTTAACCTCACAGCTTAAGAAGCTGCAGGAAACCATTGCGCAGCGATT AAAGATAGAAATTGGGGACCTTGTCCAGATCAGAGGTCACATCCGCACGTACAGAGAAGA ACGAGAAATTCATGCCACCGTTTATCATAAAGTGGATGATCCAGTGTGCAACATTCAAAT CGCAAGAATGCTCGAGCTGCCCACCATCTACAGGAAAGTTTATGACCAGCCTTTCCACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCCCGGGCACCGGAAGGTGCAGGGGCAGAGCCTCGGACAGACCCACCCTCTCTGCCCCT CTTGTGTCTGGCCGCGAGGGCGCCCATTCCTCTTTGGACCCACCCATTAAATCGGTTTCA GGATCTTCGACTCTGGGTTGGCTGGAGGCCTCCTGATGCAGTGATGCAGTCTGAATCCAG CCGGTGTGAAGAGGAACCGCCTTCCCTTTTGTGGGGTTTGGATCCAGTGTTTCTAGCCTT TGCCAAACTCTACATTAGGGATATCCTGGACTTGAAAGAGTCCCGCCAGGTGCCAGGTGT ATTTTTTTACAACGGGCATCCAATAAAACAGGTAGATATCTTGGGAACTGTAATTGGAGT GAGAGAAAGAGATGCTTTCTACAGTTATGGAGTGGATGATAGCACTGGAGTTATCAACTG CATCTGCTGGAAAAAGTTGAATAATACCGACTCCTCATCAGCTACAGCTGCTACAAATGC AAGAGAGCTGAGCTTAACCTCACAGCTTAAGAAGCTGCAGGAAACCATTGCGCAGCGATT AAAGATAGAAATTGGGGACCTTGTCCAGATCAGAGGTCACATCCGCACGTACAGAGAAGA ACGAGAAATTCATGCCACCGTTTATCATAAAGTGGATGATCCAGTGTGCAACATTCAAAT CGCAAGAATGCTCGAGCTGCCCACCATCTACAGGAAAGTTTATGACCAGCCTTTCCACCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 163-281, + strand, RNAz p=0.584262 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 163-281, + strand, RNAz p=0.584262 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-122, gnl|bosTau2|chr26 (16444861-16444985) | |
| 1-122, gnl|canFam2|chr28 (19247790-19248250) | |
| 1-122, gnl|dasNov1|scaffold_42677 (8921-9448) | |
| 1-122, gnl|echTel1|scaffold_297946 (87052-87578) | |
| 1-122, gnl|hg17|chr10 (105667657-105668198) | |
| 1-122, gnl|Hg17|chr10 (105667803-105667689) | |
| 1-122, gnl|loxAfr1|scaffold_10895 (7941-7381) | |
| 1-122, gnl|mm7|chr19 (47437278-47437653) | |
| 1-122, gnl|Mm7|chr19 (47437428-47437311) | |
| 1-122, gnl|oryCun1|scaffold_185972 (100293-100726) | |
| 1-122, gnl|panTro1|chr8 (107449590-107450152) | |
| 1-122, gnl|rheMac2|chr9 (103618227-103618707) | |
| 1-122, gnl|rn3|chr1 (253173665-253174034) | |
| 163-298, gnl|bosTau2|chr26 (16445351-16445486) | |
| 163-298, gnl|canFam2|chr28 (19247338-19247472) | |
| 163-298, gnl|dasNov1|scaffold_42677 (8449-8583) | |
| 163-298, gnl|echTel1|scaffold_297946 (86598-86739) | |
| 163-298, gnl|fr1|chrUn (178850656-178850775) | |
| 163-298, gnl|hg17|chr10 (105667201-105667335) | |
| 163-298, gnl|Hg17|chr10 (105667343-105667208) | |
| 163-298, gnl|loxAfr1|scaffold_10895 (8402-8265) | |
| 163-298, gnl|mm7|chr19 (47436684-47436818) | |
| 163-298, gnl|Mm7|chr19 (47436826-47436691) | |
| 163-298, gnl|monDom2|scaffold_14 (59282648-59282514) | |
| 163-298, gnl|oryCun1|scaffold_185972 (99852-99986) | |
| 163-298, gnl|panTro1|chr8 (107449134-107449268) | |
| 163-298, gnl|rheMac2|chr9 (103617771-103617905) | |
| 163-298, gnl|rn3|chr1 (253173059-253173193) | |
| 163-298, gnl|tetNig1|chr18 (763784-763903) | |
| 453-630, gnl|bosTau2|chr26 (16462058-16462235) | |
| 453-630, gnl|Hg17|chr10 (105649987-105649806) | |
| 453-630, gnl|Mm7|chr19 (47417700-47417520) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-122, gnl|bosTau2|chr26 (16444861-16444985) | |
| 1-122, gnl|canFam2|chr28 (19247790-19248250) | |
| 1-122, gnl|dasNov1|scaffold_42677 (8921-9448) | |
| 1-122, gnl|echTel1|scaffold_297946 (87052-87578) | |
| 1-122, gnl|hg17|chr10 (105667657-105668198) | |
| 1-122, gnl|Hg17|chr10 (105667803-105667689) | |
| 1-122, gnl|loxAfr1|scaffold_10895 (7941-7381) | |
| 1-122, gnl|mm7|chr19 (47437278-47437653) | |
| 1-122, gnl|Mm7|chr19 (47437428-47437311) | |
| 1-122, gnl|oryCun1|scaffold_185972 (100293-100726) | |
| 1-122, gnl|panTro1|chr8 (107449590-107450152) | |
| 1-122, gnl|rheMac2|chr9 (103618227-103618707) | |
| 1-122, gnl|rn3|chr1 (253173665-253174034) | |
| 163-298, gnl|bosTau2|chr26 (16445351-16445486) | |
| 163-298, gnl|canFam2|chr28 (19247338-19247472) | |
| 163-298, gnl|dasNov1|scaffold_42677 (8449-8583) | |
| 163-298, gnl|echTel1|scaffold_297946 (86598-86739) | |
| 163-298, gnl|fr1|chrUn (178850656-178850775) | |
| 163-298, gnl|hg17|chr10 (105667201-105667335) | |
| 163-298, gnl|Hg17|chr10 (105667343-105667208) | |
| 163-298, gnl|loxAfr1|scaffold_10895 (8402-8265) | |
| 163-298, gnl|mm7|chr19 (47436684-47436818) | |
| 163-298, gnl|Mm7|chr19 (47436826-47436691) | |
| 163-298, gnl|monDom2|scaffold_14 (59282648-59282514) | |
| 163-298, gnl|oryCun1|scaffold_185972 (99852-99986) | |
| 163-298, gnl|panTro1|chr8 (107449134-107449268) | |
| 163-298, gnl|rheMac2|chr9 (103617771-103617905) | |
| 163-298, gnl|rn3|chr1 (253173059-253173193) | |
| 163-298, gnl|tetNig1|chr18 (763784-763903) | |
| 453-630, gnl|bosTau2|chr26 (16462058-16462235) | |
| 453-630, gnl|Hg17|chr10 (105649987-105649806) | |
| 453-630, gnl|Mm7|chr19 (47417700-47417520) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) |