Non-Coding RNA Search

Ss1.1-rcsp15b_c23.5

Sequence:


               
               GAGGGTGACTAACAACACATACTGGCGGCTGCGGGCCGAGCCGGGCTACGGGAACCTGGA
TGGCGCTGTGCTCTGGTAGCCCAGGCCCCGGGGGGCAGGAGGCCCCAGCTCCTCCCTCCT
GCCTCCACATCCCTACGGACACACGGGCAAGGCCAGGGTCTCCCACTCACTGCCCTGGAG
ACCAAAGGGGCAGCCCTGGCTCTGGCCCTCTTCCCTCTGCCGGCCAGAGGGAGCTGCCTC
TCAGCCCATCGCCCACCCCTTGGTGGGGGTGGGAAGCAGGATTCGTGCTTCCCCAGTCTC
GTTGCCCCTGACAACTGGCATGGAAGACCCTCCTTGCTCTGTCATCCCCCTTCCTGCCCT
GCTGGGGGTCTTGGGGGAGACTCCAGCCTCTCCAGGATGTGTTCCCCATTCCAGTGCCTT
CCTAGGACACGGGGGACCCCTCGATGCTCCCCAGGTTTCCTATGCCCGGGACTCTGGCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGGTGACTAACAACACATACTGGCGGCTGCGGGCCGAGCCGGGCTACGGGAACCTGGA
TGGCGCTGTGCTCTGGTAGCCCAGGCCCCGGGGGGCAGGAGGCCCCAGCTCCTCCCTCCT
GCCTCCACATCCCTACGGACACACGGGCAAGGCCAGGGTCTCCCACTCACTGCCCTGGAG
ACCAAAGGGGCAGCCCTGGCTCTGGCCCTCTTCCCTCTGCCGGCCAGAGGGAGCTGCCTC
TCAGCCCATCGCCCACCCCTTGGTGGGGGTGGGAAGCAGGATTCGTGCTTCCCCAGTCTC
GTTGCCCCTGACAACTGGCATGGAAGACCCTCCTTGCTCTGTCATCCCCCTTCCTGCCCT
GCTGGGGGTCTTGGGGGAGACTCCAGCCTCTCCAGGATGTGTTCCCCATTCCAGTGCCTT
CCTAGGACACGGGGGACCCCTCGATGCTCCCCAGGTTTCCTATGCCCGGGACTCTGGCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               42-462, - strand, RNAz p=0.999951

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-462, - strand, RNAz p=0.999951

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               125-195, - strand, RNAmicro p=0.938743

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               125-195, - strand, RNAmicro p=0.938743

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               42-461, CR849732 Normalized and Subtracted bovine endometrium tissues 
(emb|CR849732.2|), blast E-value=0, identity=85.04% 
               

               
               151-461, 286285 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF775979.1|), 
blast E-value=0, identity=86.22% 
               

               
               68-461, 466800 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI774617.1|), 
blast E-value=0, identity=84.56% 
               

               
               42-461, 518277 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM256020.1|), 
blast E-value=0, identity=84.56% 
               

               
               151-461, 1367848 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534861.1|), 
blast E-value=0, identity=86.22% 
               

               
               42-441, 001004BEMN037163HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY086872.1|), 
blast E-value=0, identity=84.04%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               42-461, CR849732 Normalized and Subtracted bovine endometrium tissues 
(emb|CR849732.2|), blast E-value=0, identity=85.04% 
               

               
               151-461, 286285 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF775979.1|), 
blast E-value=0, identity=86.22% 
               

               
               68-461, 466800 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI774617.1|), 
blast E-value=0, identity=84.56% 
               

               
               42-461, 518277 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM256020.1|), 
blast E-value=0, identity=84.56% 
               

               
               151-461, 1367848 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN534861.1|), 
blast E-value=0, identity=86.22% 
               

               
               42-441, 001004BEMN037163HT BEMN Bos taurus cDNA, mRNA sequence (gb|DY086872.1|), 
blast E-value=0, identity=84.04%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-480, gnl|bosTau2|chr19 (30708703-30709161)
               

               
               3-480, gnl|Hg17|chr17 (43240732-43240256)
               

               
               3-480, gnl|Mm7|chr11 (97177013-97177484)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-480, gnl|bosTau2|chr19 (30708703-30709161)
               

               
               3-480, gnl|Hg17|chr17 (43240732-43240256)
               

               
               3-480, gnl|Mm7|chr11 (97177013-97177484)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ill (0.175593)
               

               
               csp (0.161186)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               pla (0.133672)

	42-461, CR849732 Normalized and Subtracted bovine endometrium tissues (emb\|CR849732.2\|), blast E-value=0, identity=85.04%
	151-461, 286285 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF775979.1\|), blast E-value=0, identity=86.22%
	68-461, 466800 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI774617.1\|), blast E-value=0, identity=84.56%
	42-461, 518277 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM256020.1\|), blast E-value=0, identity=84.56%
	151-461, 1367848 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN534861.1\|), blast E-value=0, identity=86.22%
	42-441, 001004BEMN037163HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY086872.1\|), blast E-value=0, identity=84.04%

	3-480, gnl\|bosTau2\|chr19 (30708703-30709161)
	3-480, gnl\|Hg17\|chr17 (43240732-43240256)
	3-480, gnl\|Mm7\|chr11 (97177013-97177484)