Non-Coding RNA Search

Ss1.1-rcsp16b_k13.5

Sequence:


               
               CCTTTCGTTGTGCCTTTTGTAGAGAAATTACTTCATCATGCTTTGCTGAATTGCCTTGAA
CTAGGGACCAATATCTCTATGGAGACATCCTCAGTATAGGGGATTGGGAGAATCTGCTAA
AGGCTGTCAGATGTGGGCCTCTGGCAGTTTTACCTGGGGTTGGAGGTAGAGAGGTCCCTC
TCTGAGGTAGGTCAGGTTTAGTGTCTCTCCCCAAGTGAAAGTGTACACACACAAACACAC
CCACCCACGTGCATACACCAGAGCCTGATGTCTTAACCATGAAACACTGTGGCTCTGGAG
CTCAGAATCAAAAACCATATTCCTCTCTCAAACAGAAACCTCAGATGTTGGTTCCCCCAC
CCCCAAGTCTGTTCATTTGGGGACCCTTTGCCCTTGAAGCTGTCACAGCTGACACAAATC
TATGCGGGCTGTGGAGAAGCAGCCTGTTCCCAGTCTCACGGTCCGCTCTCTCAGGCCAGG
TTAGGCCTGCCCAGCTGTCAAGGGAGGGCCGGTGATCCTGGGCGCCAAGGCTCAGAAGTG
GGGCGGGAGTGTGGCCAGCCAGGTAGGCACATCCTGCAGTAGCACGGGAAAGGCAAGGAG
GAGACAGAGTCAGCCTACCTCATTTGACTGCGGCCGGTGGAGACACACTCACATCCCAGC
TTCGATGATGTCAATCCCACAGGAATCAAGGATCTCAGTGCCAAGTGTGGCATCTCTATC
TGAAGAGCTGCTTCAACTAGACCAAGGGGCCCGGGCCTCTGTATCGGGGGAGGGTGACTG
AAATGAGCGGTCTGGCACATGGCGAGGTGCTAGCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTCGTTGTGCCTTTTGTAGAGAAATTACTTCATCATGCTTTGCTGAATTGCCTTGAA
CTAGGGACCAATATCTCTATGGAGACATCCTCAGTATAGGGGATTGGGAGAATCTGCTAA
AGGCTGTCAGATGTGGGCCTCTGGCAGTTTTACCTGGGGTTGGAGGTAGAGAGGTCCCTC
TCTGAGGTAGGTCAGGTTTAGTGTCTCTCCCCAAGTGAAAGTGTACACACACAAACACAC
CCACCCACGTGCATACACCAGAGCCTGATGTCTTAACCATGAAACACTGTGGCTCTGGAG
CTCAGAATCAAAAACCATATTCCTCTCTCAAACAGAAACCTCAGATGTTGGTTCCCCCAC
CCCCAAGTCTGTTCATTTGGGGACCCTTTGCCCTTGAAGCTGTCACAGCTGACACAAATC
TATGCGGGCTGTGGAGAAGCAGCCTGTTCCCAGTCTCACGGTCCGCTCTCTCAGGCCAGG
TTAGGCCTGCCCAGCTGTCAAGGGAGGGCCGGTGATCCTGGGCGCCAAGGCTCAGAAGTG
GGGCGGGAGTGTGGCCAGCCAGGTAGGCACATCCTGCAGTAGCACGGGAAAGGCAAGGAG
GAGACAGAGTCAGCCTACCTCATTTGACTGCGGCCGGTGGAGACACACTCACATCCCAGC
TTCGATGATGTCAATCCCACAGGAATCAAGGATCTCAGTGCCAAGTGTGGCATCTCTATC
TGAAGAGCTGCTTCAACTAGACCAAGGGGCCCGGGCCTCTGTATCGGGGGAGGGTGACTG
AAATGAGCGGTCTGGCACATGGCGAGGTGCTAGCGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14198313|gb|AAH08219.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14198313|gb|AAH08219.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               42-195, - strand, RNAz p=0.899081
               

               
               383-737, - strand, RNAz p=0.915004

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               42-195, - strand, RNAz p=0.899081
               

               
               383-737, - strand, RNAz p=0.915004

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-816, gnl|bosTau2|chr10 (11880438-11881234)
               

               
               4-816, gnl|Hg17|chr14 (23956589-23957399)
               

               
               4-816, gnl|Mm7|chr14 (50740414-50741197)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-816, gnl|bosTau2|chr10 (11880438-11881234)
               

               
               4-816, gnl|Hg17|chr14 (23956589-23957399)
               

               
               4-816, gnl|Mm7|chr14 (50740414-50741197)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.264306)
               

               
               csp (0.161186)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.264306)
               

               
               csp (0.161186)

	42-195, - strand, RNAz p=0.899081
	383-737, - strand, RNAz p=0.915004

	4-816, gnl\|bosTau2\|chr10 (11880438-11881234)
	4-816, gnl\|Hg17\|chr14 (23956589-23957399)
	4-816, gnl\|Mm7\|chr14 (50740414-50741197)