Non-Coding RNA Search

Ss1.1-rcsp17b_a12.5.5

Sequence:


               
               GATTCTCAGACTGTGATCCAGGAGCCGGCGATGTCAGTGTCTCTTGGAGGGACCGTCACA
CTCACCTGCTCCTTTACCTCTGGGTCAGTCACTAGTAATAACTACCCTGGCTGGTACCGA
CAGACGCCAGGCCAGCCTCCTCGAACTGTTATCTACAACACAAACAGCCGCCCGACTGGG
GTCCCCAGTCGCTTCTCTGGAGCCATCTCTGGGAACAAAGCCACCCTCACCATCACGGGG
GCCCAGGCTGAGGACGAGGCCGACTACTTCTGTGCTCTGTATAAGGGAAGTGGTACCTAC
ACTTATATTTTCGGCGGTGGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCCC
ACGGTCAACCTCTTCCCGCCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGTG
TGTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTCTCAGACTGTGATCCAGGAGCCGGCGATGTCAGTGTCTCTTGGAGGGACCGTCACA
CTCACCTGCTCCTTTACCTCTGGGTCAGTCACTAGTAATAACTACCCTGGCTGGTACCGA
CAGACGCCAGGCCAGCCTCCTCGAACTGTTATCTACAACACAAACAGCCGCCCGACTGGG
GTCCCCAGTCGCTTCTCTGGAGCCATCTCTGGGAACAAAGCCACCCTCACCATCACGGGG
GCCCAGGCTGAGGACGAGGCCGACTACTTCTGTGCTCTGTATAAGGGAAGTGGTACCTAC
ACTTATATTTTCGGCGGTGGGACCCATCTGACCGTCCTCGGTCAGCCCAAGGCCGCTCCC
ACGGTCAACCTCTTCCCGCCCTCCTCTGAGGAGCTCGGCACCAACAAGGCCACCCTGGTG
TGTCTAATAAGTGACTTCTACCCGGGCGCCGTGACGGTGACCTGGAAGGCAGGCGGCACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|40287833|gb|AAR84027.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|40287833|gb|AAR84027.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               340-478, gnl|bosTau2|chr17 (41403615-41403753)
               

               
               340-478, gnl|Hg17|chr22 (21586260-21586398)
               

               
               340-478, gnl|Mm7|chr16_random (2587805-2587943)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               340-478, gnl|bosTau2|chr17 (41403615-41403753)
               

               
               340-478, gnl|Hg17|chr22 (21586260-21586398)
               

               
               340-478, gnl|Mm7|chr16_random (2587805-2587943)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cag (0.604778)
               

               
               csp (0.483559)
               

               
               cly (0.241284)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.604778)
               

               
               csp (0.483559)
               

               
               cly (0.241284)

	340-478, gnl\|bosTau2\|chr17 (41403615-41403753)
	340-478, gnl\|Hg17\|chr22 (21586260-21586398)
	340-478, gnl\|Mm7\|chr16_random (2587805-2587943)