Non-Coding RNA Search

Ss1.1-rcsp24b_e20.5

Sequence:


               
               AAACTTTTGATTTTATAGCTTTTGAGCTAAAACAACTTTTGTAAAGATTAAGCTCATTTA
GATTTTTTTTTTTTTTTTTTTTTTTAAGTATTTCAGCAGGATCTGCTGCAGGGGTTTTGT
TGTCGTTATATTTGTTTGCTTTTAAATTAACCGTTTCAAGCTTTGAATACTTAAGGCTTT
AGAGGGAGAACCCAATTTTTAATTATGTTGGCTTTTTATAAAGCTTGAGTTATGTAAGAT
TTCAATAAAAATTTGCTACCAAGATGATTGCCTTATTGAATAGGTCACTCTTAAATTCCT
TTAAATATTGATAATTTGCTATTCGTGAAAACAGTGTGAATTCTACTTAAGTGTAAAACA
AGGCAAGCCTCAGACCAGCAATAAATTACTCAATTTGGAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTTTTGATTTTATAGCTTTTGAGCTAAAACAACTTTTGTAAAGATTAAGCTCATTTA
GATTTTTTTTTTTTTTTTTTTTTTTAAGTATTTCAGCAGGATCTGCTGCAGGGGTTTTGT
TGTCGTTATATTTGTTTGCTTTTAAATTAACCGTTTCAAGCTTTGAATACTTAAGGCTTT
AGAGGGAGAACCCAATTTTTAATTATGTTGGCTTTTTATAAAGCTTGAGTTATGTAAGAT
TTCAATAAAAATTTGCTACCAAGATGATTGCCTTATTGAATAGGTCACTCTTAAATTCCT
TTAAATATTGATAATTTGCTATTCGTGAAAACAGTGTGAATTCTACTTAAGTGTAAAACA
AGGCAAGCCTCAGACCAGCAATAAATTACTCAATTTGGAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               68-183, - strand, RNAz p=0.974221

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               68-183, - strand, RNAz p=0.974221

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               86-183, DB812312 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB812312.1|), blast E-value=9.80909e-45, identity=98.98% 
               

               
               86-183, DB814608 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB814608.1|), blast E-value=9.80909e-45, identity=98.98% 
               

               
               86-183, DB814698 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB814698.1|), blast E-value=0, identity=100% 
               

               
               86-182, DB814966 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB814966.1|), blast E-value=4.06377e-44, identity=98.97% 
               

               
               86-183, UMC-pd12_14end-007-h11 Endometrium pregnant gilt day 12 & 14 
(gb|CO994817.1|), blast E-value=0, identity=100% 
               

               
               86-179, POSM0605002_E16F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV904169.1|), blast E-value=9.80909e-45, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               86-183, DB812312 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB812312.1|), blast E-value=9.80909e-45, identity=98.98% 
               

               
               86-183, DB814608 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB814608.1|), blast E-value=9.80909e-45, identity=98.98% 
               

               
               86-183, DB814698 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB814698.1|), blast E-value=0, identity=100% 
               

               
               86-182, DB814966 full-length enriched swine cDNA library, adult ovary Sus 
(dbj|DB814966.1|), blast E-value=4.06377e-44, identity=98.97% 
               

               
               86-183, UMC-pd12_14end-007-h11 Endometrium pregnant gilt day 12 & 14 
(gb|CO994817.1|), blast E-value=0, identity=100% 
               

               
               86-179, POSM0605002_E16F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV904169.1|), blast E-value=9.80909e-45, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-387, gnl|bosTau2|chr13 (52820842-52820468)
               

               
               6-387, gnl|Hg17|chr20 (41523331-41523736)
               

               
               6-387, gnl|Mm7|chr2 (162675861-162676231)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-387, gnl|bosTau2|chr13 (52820842-52820468)
               

               
               6-387, gnl|Hg17|chr20 (41523331-41523736)
               

               
               6-387, gnl|Mm7|chr2 (162675861-162676231)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               lun (0.150489)

	86-183, DB812312 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB812312.1\|), blast E-value=9.80909e-45, identity=98.98%
	86-183, DB814608 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB814608.1\|), blast E-value=9.80909e-45, identity=98.98%
	86-183, DB814698 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB814698.1\|), blast E-value=0, identity=100%
	86-182, DB814966 full-length enriched swine cDNA library, adult ovary Sus (dbj\|DB814966.1\|), blast E-value=4.06377e-44, identity=98.97%
	86-183, UMC-pd12_14end-007-h11 Endometrium pregnant gilt day 12 & 14 (gb\|CO994817.1\|), blast E-value=0, identity=100%
	86-179, POSM0605002_E16F porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV904169.1\|), blast E-value=9.80909e-45, identity=100%

	6-387, gnl\|bosTau2\|chr13 (52820842-52820468)
	6-387, gnl\|Hg17\|chr20 (41523331-41523736)
	6-387, gnl\|Mm7\|chr2 (162675861-162676231)