Non-Coding RNA Search

Ss1.1-rcsp28b_c4.5

Sequence:


               
               ATGGAAGTCCCTGGGCCAGGGATTGAATCTGAACCACAGCTGCGGCAACACTAGATACTT
TAACCCACTGTGCTGGGCAGGGGATTGAACCCTGTGAACCCTGGCCTCCACAGTGACCTG
AGCTGCTGCAGTCGGGATTCCTAACCCACTGTACCATTAATAGCGAGAACTTCCAGAACC
AGTGTACTTGTTCAGTCTGACATTAGTGACTCTGGGCTGGGGCCAGACAGATGTACTTTC
TAGTTTGTGCTCTGCCACTAATTTGATATGTGACCTTGGGCAAGTCATTTACCTTCTTTG
GGCCTCAGTTGCCTCATGTGCAAAGTGAAGGAGCTGGACTAGATGAGTTCTTCTAGCTCT
GAAGTTTAAGTGACCTTGCCTACCTTGCAGCAGTTTTTTATTTCTTCCTTACCTTTGGTC
TGCTGTTTGAGGGGGCTTTTTACTTATTTCTGCATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGAAGTCCCTGGGCCAGGGATTGAATCTGAACCACAGCTGCGGCAACACTAGATACTT
TAACCCACTGTGCTGGGCAGGGGATTGAACCCTGTGAACCCTGGCCTCCACAGTGACCTG
AGCTGCTGCAGTCGGGATTCCTAACCCACTGTACCATTAATAGCGAGAACTTCCAGAACC
AGTGTACTTGTTCAGTCTGACATTAGTGACTCTGGGCTGGGGCCAGACAGATGTACTTTC
TAGTTTGTGCTCTGCCACTAATTTGATATGTGACCTTGGGCAAGTCATTTACCTTCTTTG
GGCCTCAGTTGCCTCATGTGCAAAGTGAAGGAGCTGGACTAGATGAGTTCTTCTAGCTCT
GAAGTTTAAGTGACCTTGCCTACCTTGCAGCAGTTTTTTATTTCTTCCTTACCTTTGGTC
TGCTGTTTGAGGGGGCTTTTTACTTATTTCTGCATT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               253-450, + strand, RNAz p=0.930639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               253-450, + strand, RNAz p=0.930639

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               253-450, DB816958 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|DB816958.1|), blast E-value=0, identity=99.49% 
               

               
               253-450, BX111778 Soares_fetal_lung_NbHL19W Homo sapiens cDNA clone 
(emb|BX111778.1|), blast E-value=0, identity=88.5% 
               

               
               253-450, 601298655F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb|BE382352.1|), 
blast E-value=0, identity=88.5% 
               

               
               271-450, 605454 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB429623.1|), 
blast E-value=0, identity=92.78% 
               

               
               271-427, 4123612 BARC 8BOV Bos taurus cDNA clone 8BOV_37A18 5', mRNA 
(gb|CN789185.1|), blast E-value=0, identity=91.72% 
               

               
               271-450, 4124192 BARC 8BOV Bos taurus cDNA clone 8BOV_31N14 5', mRNA 
(gb|CN789701.1|), blast E-value=0, identity=92.78%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               253-450, DB816958 full-length enriched swine cDNA library, adult spleen Sus 
(dbj|DB816958.1|), blast E-value=0, identity=99.49% 
               

               
               253-450, BX111778 Soares_fetal_lung_NbHL19W Homo sapiens cDNA clone 
(emb|BX111778.1|), blast E-value=0, identity=88.5% 
               

               
               253-450, 601298655F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb|BE382352.1|), 
blast E-value=0, identity=88.5% 
               

               
               271-450, 605454 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb|CB429623.1|), 
blast E-value=0, identity=92.78% 
               

               
               271-427, 4123612 BARC 8BOV Bos taurus cDNA clone 8BOV_37A18 5', mRNA 
(gb|CN789185.1|), blast E-value=0, identity=91.72% 
               

               
               271-450, 4124192 BARC 8BOV Bos taurus cDNA clone 8BOV_31N14 5', mRNA 
(gb|CN789701.1|), blast E-value=0, identity=92.78%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               174-450, gnl|bosTau2|chr24 (33022562-33022840)
               

               
               174-450, gnl|Hg17|chr18 (46863946-46864223)
               

               
               174-450, gnl|Mm7|chr18 (74030482-74030229)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               174-450, gnl|bosTau2|chr24 (33022562-33022840)
               

               
               174-450, gnl|Hg17|chr18 (46863946-46864223)
               

               
               174-450, gnl|Mm7|chr18 (74030482-74030229)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	253-450, DB816958 full-length enriched swine cDNA library, adult spleen Sus (dbj\|DB816958.1\|), blast E-value=0, identity=99.49%
	253-450, BX111778 Soares_fetal_lung_NbHL19W Homo sapiens cDNA clone (emb\|BX111778.1\|), blast E-value=0, identity=88.5%
	253-450, 601298655F1 NIH_MGC_19 Homo sapiens cDNA clone IMAGE (gb\|BE382352.1\|), blast E-value=0, identity=88.5%
	271-450, 605454 MARC 6BOV Bos taurus cDNA 3', mRNA sequence (gb\|CB429623.1\|), blast E-value=0, identity=92.78%
	271-427, 4123612 BARC 8BOV Bos taurus cDNA clone 8BOV_37A18 5', mRNA (gb\|CN789185.1\|), blast E-value=0, identity=91.72%
	271-450, 4124192 BARC 8BOV Bos taurus cDNA clone 8BOV_31N14 5', mRNA (gb\|CN789701.1\|), blast E-value=0, identity=92.78%

	174-450, gnl\|bosTau2\|chr24 (33022562-33022840)
	174-450, gnl\|Hg17\|chr18 (46863946-46864223)
	174-450, gnl\|Mm7\|chr18 (74030482-74030229)