Non-Coding RNA Search

Ss1.1-rcsp28b_h24.5

Sequence:


               
               GCGGCGCGCGCGAGGCTGCTCTGCTTTCCCGGCTCCCAGCGCTGGCCGTCAGCATGGATG
CTCGCCGCGTGCGGCAGAAGGATGGCAGAGTAAAGAAGAACTTCAAGAAATTCAGATATG
TGAAGTTGATTTCCATGGAAACCTCGTCATCTTCTGATGACAGTTGTGACAGCTTTGCTT
CTGATAATTTTGCAAACACAGAGGCTGCAGGCAGACCGTGCCGGCTGTCGGACCCGCAGT
CAGTGCAGACGTTCCGGACCCCTCCGAGTGGCCATGAAGTTTCCCACTCGAAACTCCAGG
CGAGCAGCCCCCAAGAGAGCAGCGCCCCCTGAACCCTCAGAGAACTCTGTGACCGATTCC
AATACTGATTCAGAAGATGAAAATGGCATGAATTTCTTGGAGAAAAGGGCTTTAAATATA
AAGCAAAACAAAGCAATGCTTGCAAAACTCATGTCAGAATTAGAAAGCTTTCCTGGCTCC
TTCCCTGGAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGCGCGCGAGGCTGCTCTGCTTTCCCGGCTCCCAGCGCTGGCCGTCAGCATGGATG
CTCGCCGCGTGCGGCAGAAGGATGGCAGAGTAAAGAAGAACTTCAAGAAATTCAGATATG
TGAAGTTGATTTCCATGGAAACCTCGTCATCTTCTGATGACAGTTGTGACAGCTTTGCTT
CTGATAATTTTGCAAACACAGAGGCTGCAGGCAGACCGTGCCGGCTGTCGGACCCGCAGT
CAGTGCAGACGTTCCGGACCCCTCCGAGTGGCCATGAAGTTTCCCACTCGAAACTCCAGG
CGAGCAGCCCCCAAGAGAGCAGCGCCCCCTGAACCCTCAGAGAACTCTGTGACCGATTCC
AATACTGATTCAGAAGATGAAAATGGCATGAATTTCTTGGAGAAAAGGGCTTTAAATATA
AAGCAAAACAAAGCAATGCTTGCAAAACTCATGTCAGAATTAGAAAGCTTTCCTGGCTCC
TTCCCTGGAAGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-201, + strand, RNAz p=0.914087

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-201, + strand, RNAz p=0.914087

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               65-201, gnl|bosTau2|chr2 (15306672-15306536)
               

               
               65-201, gnl|canFam2|chr25 (3003231-3003362)
               

               
               65-201, gnl|dasNov1|scaffold_16128 (50361-50489)
               

               
               65-201, gnl|echTel1|scaffold_234546 (7501-7373)
               

               
               65-201, gnl|fr1|chrUn (7434670-7434559)
               

               
               65-201, gnl|Hg17|chr2 (174048937-174049073)
               

               
               65-201, gnl|hg17|chr9 (75247321-75247447)
               

               
               65-201, gnl|mm7|chr16 (15741882-15742017)
               

               
               65-201, gnl|Mm7|chr2 (72322606-72322739)
               

               
               65-201, gnl|oryCun1|scaffold_97223 (4881-4756)
               

               
               65-201, gnl|panTro1|chr11 (59131487-59131613)
               

               
               65-201, gnl|rheMac2|chr15 (84171572-84171698)
               

               
               65-201, gnl|rn3|chr3 (54847743-54847617)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-201, gnl|bosTau2|chr2 (15306672-15306536)
               

               
               65-201, gnl|canFam2|chr25 (3003231-3003362)
               

               
               65-201, gnl|dasNov1|scaffold_16128 (50361-50489)
               

               
               65-201, gnl|echTel1|scaffold_234546 (7501-7373)
               

               
               65-201, gnl|fr1|chrUn (7434670-7434559)
               

               
               65-201, gnl|Hg17|chr2 (174048937-174049073)
               

               
               65-201, gnl|hg17|chr9 (75247321-75247447)
               

               
               65-201, gnl|mm7|chr16 (15741882-15742017)
               

               
               65-201, gnl|Mm7|chr2 (72322606-72322739)
               

               
               65-201, gnl|oryCun1|scaffold_97223 (4881-4756)
               

               
               65-201, gnl|panTro1|chr11 (59131487-59131613)
               

               
               65-201, gnl|rheMac2|chr15 (84171572-84171698)
               

               
               65-201, gnl|rn3|chr3 (54847743-54847617)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               eep (0.122564)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               eep (0.122564)

	65-201, gnl\|bosTau2\|chr2 (15306672-15306536)
	65-201, gnl\|canFam2\|chr25 (3003231-3003362)
	65-201, gnl\|dasNov1\|scaffold_16128 (50361-50489)
	65-201, gnl\|echTel1\|scaffold_234546 (7501-7373)
	65-201, gnl\|fr1\|chrUn (7434670-7434559)
	65-201, gnl\|Hg17\|chr2 (174048937-174049073)
	65-201, gnl\|hg17\|chr9 (75247321-75247447)
	65-201, gnl\|mm7\|chr16 (15741882-15742017)
	65-201, gnl\|Mm7\|chr2 (72322606-72322739)
	65-201, gnl\|oryCun1\|scaffold_97223 (4881-4756)
	65-201, gnl\|panTro1\|chr11 (59131487-59131613)
	65-201, gnl\|rheMac2\|chr15 (84171572-84171698)
	65-201, gnl\|rn3\|chr3 (54847743-54847617)