Ss1.1-rcsp31b_o4.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGTGGTCAACTTGACCGACAGTTTGTCAGTCGAGAAGGGCAGAAAGGCTAGCGCTGGTG GGTGGATAGGGAGAGAGATCTAAGACTACTTCTTCCTGTGTGTGCGGGGGGCGGTGAGTA GAGGTCCAGAGAAGCAAAAAGGACGGGGAAAGAAAAGGAGAGTGCTTCTTGATCAGTTTC CACCTCCTGCCTTCAAACTCAGTGCGCTTTCCTTGCGGAAAGTACGCTGGGTTCAGGGCG CGGGAGTGCGCGCCTCAGTGGCCCGCTTGTCGCCAGGCGCATGTTTCCTTTCCTGAGCTT CAACATAAATGGACTCAATCCTACTGCCCACTACAACGTTTTCGTAGAGGTGGTGCTGGC GGACCCCAACCACTGGCGCTTCCAGGGGGGCAAGTGGGTGACCTGCGGCAAAGCGGACAA TAACATGCAGGGCAACAAAATGTATGTTCACCCAGAGTCTCCTAATACTGGTTCCCACTG GATGAGACAGGAAATTTCATTTGGGAAATTAAAACTCACCAATAACAAAGGCGCGAATAA CAACAACACTCAGATGATAGTCTTGCAATCTTTACACAAGTACCAACCACGTCTGCACAT TGTTGAAGTCACAGAGGATGGTGTAGAGGACTTGAATGAGCCCTCGAAGACTCAGACCTT CACCTTCTCAGAAACGCAGTTCATTGCAGTGACTGCCTACCAAAACACTGACATAACGCA ACTAAAGATTGATCACAACCCCTTTGCAAAAGGCTTCAGGGACAACTACGACTCCATGTA CACCGCTTCCGAAAATGACAGGTTAACTCCATCTCCCACGGATTCTCCTAAATCCCATCA GATTGTCCCCGGAGGTCGGTACGGCGTTCAGTCCTTCTTCCCGGAGCCCTTTGTCAACAC CTTACCTCAAGCCCGCTATTATAATGGCGAGAGAACCGTGCCACAGACCAACGGCCTCCT TTCACCCCAACAGAGCGAAGAGGTGGCCAGCCCTCCCCAGCGGTGGCTGGTCACGCCTGT CCAGCAACCTGGGACCAACAAACTAGACATCGGTTCCTATGAGTCTGAATATACTTCCAG CACCTTGCTCCCGTATGGTATTAAACCCTTGCCCCTGCAGACCTCCCATGCCCTGGGGTA CTACCCCGACCCCACCTTCCCTGCCATGGCAGGGTGGGGAGGCAGAGGTTCTTATCAGAG GAAGATGGCGGCTGGACTCCCATGGACCTCCAGAACAAGCCCCCCTGTGTTCTCTGAAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGTGGTCAACTTGACCGACAGTTTGTCAGTCGAGAAGGGCAGAAAGGCTAGCGCTGGTG GGTGGATAGGGAGAGAGATCTAAGACTACTTCTTCCTGTGTGTGCGGGGGGCGGTGAGTA GAGGTCCAGAGAAGCAAAAAGGACGGGGAAAGAAAAGGAGAGTGCTTCTTGATCAGTTTC CACCTCCTGCCTTCAAACTCAGTGCGCTTTCCTTGCGGAAAGTACGCTGGGTTCAGGGCG CGGGAGTGCGCGCCTCAGTGGCCCGCTTGTCGCCAGGCGCATGTTTCCTTTCCTGAGCTT CAACATAAATGGACTCAATCCTACTGCCCACTACAACGTTTTCGTAGAGGTGGTGCTGGC GGACCCCAACCACTGGCGCTTCCAGGGGGGCAAGTGGGTGACCTGCGGCAAAGCGGACAA TAACATGCAGGGCAACAAAATGTATGTTCACCCAGAGTCTCCTAATACTGGTTCCCACTG GATGAGACAGGAAATTTCATTTGGGAAATTAAAACTCACCAATAACAAAGGCGCGAATAA CAACAACACTCAGATGATAGTCTTGCAATCTTTACACAAGTACCAACCACGTCTGCACAT TGTTGAAGTCACAGAGGATGGTGTAGAGGACTTGAATGAGCCCTCGAAGACTCAGACCTT CACCTTCTCAGAAACGCAGTTCATTGCAGTGACTGCCTACCAAAACACTGACATAACGCA ACTAAAGATTGATCACAACCCCTTTGCAAAAGGCTTCAGGGACAACTACGACTCCATGTA CACCGCTTCCGAAAATGACAGGTTAACTCCATCTCCCACGGATTCTCCTAAATCCCATCA GATTGTCCCCGGAGGTCGGTACGGCGTTCAGTCCTTCTTCCCGGAGCCCTTTGTCAACAC CTTACCTCAAGCCCGCTATTATAATGGCGAGAGAACCGTGCCACAGACCAACGGCCTCCT TTCACCCCAACAGAGCGAAGAGGTGGCCAGCCCTCCCCAGCGGTGGCTGGTCACGCCTGT CCAGCAACCTGGGACCAACAAACTAGACATCGGTTCCTATGAGTCTGAATATACTTCCAG CACCTTGCTCCCGTATGGTATTAAACCCTTGCCCCTGCAGACCTCCCATGCCCTGGGGTA CTACCCCGACCCCACCTTCCCTGCCATGGCAGGGTGGGGAGGCAGAGGTTCTTATCAGAG GAAGATGGCGGCTGGACTCCCATGGACCTCCAGAACAAGCCCCCCTGTGTTCTCTGAAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 173-277, - strand, RNAz p=0.886941 | |
| 1094-1260, - strand, RNAz p=0.983624 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 173-277, - strand, RNAz p=0.886941 | |
| 1094-1260, - strand, RNAz p=0.983624 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-277, gnl|bosTau2|chr22 (1094751-1095024) | |
| 1-277, gnl|Hg17|chr3 (27739202-27738924) | |
| 1-277, gnl|Mm7|chr9 (118156856-118157187) | |
| 551-711, gnl|bosTau2|chr22 (1098353-1098513) | |
| 551-711, gnl|canFam2|chr23 (19550414-19550228) | |
| 551-711, gnl|danRer3|chr9 (3035656-3035821) | |
| 551-711, gnl|dasNov1|scaffold_127005 (5787-5973) | |
| 551-711, gnl|echTel1|scaffold_321537 (4077-4242) | |
| 551-711, gnl|fr1|chrUn (223473478-223473655) | |
| 551-711, gnl|galGal2|chr2 (37711619-37711799) | |
| 551-711, gnl|hg17|chr3 (27735227-27735412) | |
| 551-711, gnl|Hg17|chr3 (27735391-27735231) | |
| 551-711, gnl|loxAfr1|scaffold_23938 (37924-37738) | |
| 551-711, gnl|mm7|chr9 (118160816-118160635) | |
| 551-711, gnl|Mm7|chr9 (118160650-118160810) | |
| 551-711, gnl|monDom2|scaffold_2 (55929438-55929257) | |
| 551-711, gnl|oryCun1|scaffold_146331 (3330-3144) | |
| 551-711, gnl|panTro1|chr2 (28669817-28670002) | |
| 551-711, gnl|rheMac2|chr2 (170109713-170109899) | |
| 551-711, gnl|rn3|chr8 (123400511-123400326) | |
| 551-711, gnl|tetNig1|chr21_random (2630428-2630598) | |
| 551-711, gnl|xenTro1|scaffold_43 (2963480-2963656) | |
| 775-1260, gnl|bosTau2|chr22 (1099422-1099907) | |
| 775-1260, gnl|Hg17|chr3 (27734303-27733818) | |
| 775-1260, gnl|Mm7|chr9 (118162938-118163423) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-277, gnl|bosTau2|chr22 (1094751-1095024) | |
| 1-277, gnl|Hg17|chr3 (27739202-27738924) | |
| 1-277, gnl|Mm7|chr9 (118156856-118157187) | |
| 551-711, gnl|bosTau2|chr22 (1098353-1098513) | |
| 551-711, gnl|canFam2|chr23 (19550414-19550228) | |
| 551-711, gnl|danRer3|chr9 (3035656-3035821) | |
| 551-711, gnl|dasNov1|scaffold_127005 (5787-5973) | |
| 551-711, gnl|echTel1|scaffold_321537 (4077-4242) | |
| 551-711, gnl|fr1|chrUn (223473478-223473655) | |
| 551-711, gnl|galGal2|chr2 (37711619-37711799) | |
| 551-711, gnl|hg17|chr3 (27735227-27735412) | |
| 551-711, gnl|Hg17|chr3 (27735391-27735231) | |
| 551-711, gnl|loxAfr1|scaffold_23938 (37924-37738) | |
| 551-711, gnl|mm7|chr9 (118160816-118160635) | |
| 551-711, gnl|Mm7|chr9 (118160650-118160810) | |
| 551-711, gnl|monDom2|scaffold_2 (55929438-55929257) | |
| 551-711, gnl|oryCun1|scaffold_146331 (3330-3144) | |
| 551-711, gnl|panTro1|chr2 (28669817-28670002) | |
| 551-711, gnl|rheMac2|chr2 (170109713-170109899) | |
| 551-711, gnl|rn3|chr8 (123400511-123400326) | |
| 551-711, gnl|tetNig1|chr21_random (2630428-2630598) | |
| 551-711, gnl|xenTro1|scaffold_43 (2963480-2963656) | |
| 775-1260, gnl|bosTau2|chr22 (1099422-1099907) | |
| 775-1260, gnl|Hg17|chr3 (27734303-27733818) | |
| 775-1260, gnl|Mm7|chr9 (118162938-118163423) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.161186) | |
| cty (0.10408) |