Non-Coding RNA Search

Ss1.1-rcsp37b_k14.5

Sequence:


               
               GCTACTCAGCGCTGCGGCTGCTCTCCTGCTCTGATTCGAACGTGCCTCCGCAGGTCTGGT
GTCCTGAGGGAGCCGAGCAGAGCCGCGTGCGGAACAAACTAAAACGGCTTATCGCAAAGA
GACCGCCCTTGCAAACCCTGCAGGAGCGGGGTCTGCTCCGAGATCAGGTGTTGGGCTGCC
AGTGGGAATCTCTATGCCAGCGGGAAGGAGACACTGTGCCCAGCTTTGTGCGGCTCTGCA
TTGCTGCAGTGGATAAAAGAGGTCTAGATGTGGATGGCATTTACCGGGTGAGTGGGAACT
TGGCAGTGGTCCAGAAGCTTCGTTTCTTGGTGGACAGAGAGCGGGCGATCACCTCTGATG
GGAGGTACATGTTCCCAGAACAGCAAGGACAAGGTACTTATATGGCAGGCCTCTCAGATC
CTTAAACGTTTCTCACATCCCTGTTCCCTGTGGCTTCCTCATGGCCTGCTCCTGGGGGGT
TGTCCCCATCCTGATGCCTGTGGTCTTGCCGCACTAGGGACCCCGTAGGCATACCTGTGA
TCTGCCTAAACGGGATCTTTTCCCAAACTCCTGATCTCTCAGCCTGTGGGTCCCTTGAGC
CCTTTGTGAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTACTCAGCGCTGCGGCTGCTCTCCTGCTCTGATTCGAACGTGCCTCCGCAGGTCTGGT
GTCCTGAGGGAGCCGAGCAGAGCCGCGTGCGGAACAAACTAAAACGGCTTATCGCAAAGA
GACCGCCCTTGCAAACCCTGCAGGAGCGGGGTCTGCTCCGAGATCAGGTGTTGGGCTGCC
AGTGGGAATCTCTATGCCAGCGGGAAGGAGACACTGTGCCCAGCTTTGTGCGGCTCTGCA
TTGCTGCAGTGGATAAAAGAGGTCTAGATGTGGATGGCATTTACCGGGTGAGTGGGAACT
TGGCAGTGGTCCAGAAGCTTCGTTTCTTGGTGGACAGAGAGCGGGCGATCACCTCTGATG
GGAGGTACATGTTCCCAGAACAGCAAGGACAAGGTACTTATATGGCAGGCCTCTCAGATC
CTTAAACGTTTCTCACATCCCTGTTCCCTGTGGCTTCCTCATGGCCTGCTCCTGGGGGGT
TGTCCCCATCCTGATGCCTGTGGTCTTGCCGCACTAGGGACCCCGTAGGCATACCTGTGA
TCTGCCTAAACGGGATCTTTTCCCAAACTCCTGATCTCTCAGCCTGTGGGTCCCTTGAGC
CCTTTGTGAGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|6841092|gb|AAF28899.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|6841092|gb|AAF28899.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               509-612, - strand, RNAz p=0.972056

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               509-612, - strand, RNAz p=0.972056

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-168, gnl|bosTau2|chr5 (34806370-34806535)
               

               
               1-168, gnl|canFam2|chr10 (4562052-4562161)
               

               
               1-168, gnl|danRer3|chr12 (27352044-27352137)
               

               
               1-168, gnl|dasNov1|scaffold_16457 (4598-4458)
               

               
               1-168, gnl|fr1|chrUn (270804224-270804123)
               

               
               1-168, gnl|hg17|chr12 (56155324-56155438)
               

               
               1-168, gnl|Hg17|chr12 (56155502-56155335)
               

               
               1-168, gnl|loxAfr1|scaffold_67481 (6541-6425)
               

               
               1-168, gnl|mm7|chr10 (126828621-126828503)
               

               
               1-168, gnl|Mm7|chr10 (126828459-126828607)
               

               
               1-168, gnl|oryCun1|scaffold_213174 (138851-138966)
               

               
               1-168, gnl|panTro1|chr10 (57400721-57400835)
               

               
               1-168, gnl|rheMac2|chr11 (54553313-54553427)
               

               
               1-168, gnl|rn3|chr7 (67306059-67305941)
               

               
               1-168, gnl|tetNig1|chr11 (2687533-2687430)
               


               
               338-612, gnl|bosTau2|chr5 (34807334-34807609)
               

               
               338-612, gnl|Hg17|chr12 (56154528-56154250)
               

               
               338-612, gnl|Mm7|chr10 (126829488-126829757)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-168, gnl|bosTau2|chr5 (34806370-34806535)
               

               
               1-168, gnl|canFam2|chr10 (4562052-4562161)
               

               
               1-168, gnl|danRer3|chr12 (27352044-27352137)
               

               
               1-168, gnl|dasNov1|scaffold_16457 (4598-4458)
               

               
               1-168, gnl|fr1|chrUn (270804224-270804123)
               

               
               1-168, gnl|hg17|chr12 (56155324-56155438)
               

               
               1-168, gnl|Hg17|chr12 (56155502-56155335)
               

               
               1-168, gnl|loxAfr1|scaffold_67481 (6541-6425)
               

               
               1-168, gnl|mm7|chr10 (126828621-126828503)
               

               
               1-168, gnl|Mm7|chr10 (126828459-126828607)
               

               
               1-168, gnl|oryCun1|scaffold_213174 (138851-138966)
               

               
               1-168, gnl|panTro1|chr10 (57400721-57400835)
               

               
               1-168, gnl|rheMac2|chr11 (54553313-54553427)
               

               
               1-168, gnl|rn3|chr7 (67306059-67305941)
               

               
               1-168, gnl|tetNig1|chr11 (2687533-2687430)
               


               
               338-612, gnl|bosTau2|chr5 (34807334-34807609)
               

               
               338-612, gnl|Hg17|chr12 (56154528-56154250)
               

               
               338-612, gnl|Mm7|chr10 (126829488-126829757)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fty (0.17584)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               lnt (0.142308)

	1-168, gnl\|bosTau2\|chr5 (34806370-34806535)
	1-168, gnl\|canFam2\|chr10 (4562052-4562161)
	1-168, gnl\|danRer3\|chr12 (27352044-27352137)
	1-168, gnl\|dasNov1\|scaffold_16457 (4598-4458)
	1-168, gnl\|fr1\|chrUn (270804224-270804123)
	1-168, gnl\|hg17\|chr12 (56155324-56155438)
	1-168, gnl\|Hg17\|chr12 (56155502-56155335)
	1-168, gnl\|loxAfr1\|scaffold_67481 (6541-6425)
	1-168, gnl\|mm7\|chr10 (126828621-126828503)
	1-168, gnl\|Mm7\|chr10 (126828459-126828607)
	1-168, gnl\|oryCun1\|scaffold_213174 (138851-138966)
	1-168, gnl\|panTro1\|chr10 (57400721-57400835)
	1-168, gnl\|rheMac2\|chr11 (54553313-54553427)
	1-168, gnl\|rn3\|chr7 (67306059-67305941)
	1-168, gnl\|tetNig1\|chr11 (2687533-2687430)

	338-612, gnl\|bosTau2\|chr5 (34807334-34807609)
	338-612, gnl\|Hg17\|chr12 (56154528-56154250)
	338-612, gnl\|Mm7\|chr10 (126829488-126829757)