Non-Coding RNA Search

Ss1.1-rcsp38b_i8.5

Sequence:


               
               CGTGCTGGTGCCTCACGGCCCACCCACGGACCTCCCTGGGCTGAGCCGAGAGGTCACACA
GGACGATCTGGACAGAATCCAGGCCCACCAGTGGCCAGGGGTGAATGGGTGTCAGGACAC
ACAGGGTAACTGGTATGACTGGACGCAGTGCATATCGCTCGACCCGCACGGCGACGACGG
GCGGTTGAACATTCTGCCTTATGTCTGCTTGGACTGACCGTCCCGCGGGCTCTAAGTGCA
TTCCCACCTTGCAGTTAGCCGTGGAGGGTGGGGCGCCAGGACCCTGCCACCTCCAGTGGT
TGGGAATCCAGGGAGTCCGGCCTGGGGCGGGAGGGAGGGGGCGAGAGTCTCTAGGTCTCT
CCGTGCTCTTCCCTCAAAATTCTCCTTCTTTTGTGAAATGCTGCTACCTGTTTACTAACA
AAATTGCAAAGGAAGGACCGTGTGGAAGGAAGGCCAGCAAAGTGAGTTCAGAACTCTATA
GCAAACCAGCTATAAAAAGCGTTAGTTCCCCACCTCAGAAGAGGTGTGGACGCTGCCCAG
CCCCCATGAGCTGGGACCTCAGTTGCACGCATGCAGAGAAAACCTGTGGAAGAGGTTACC
TTTAACACAGCAACAGAAGCACGCATCTCATCTCTTTGCATTTTCTGTTTTTTAATGTGG
CCCTGAGTGAGGCAGTGGGCCACACTGCAGTCTCTGTTTGCACCCCACCTGGCCAGCTTT
TCCATCGTGGGTGCCAGAAGCTTCTCAGCTATAGCAAGCTGCTGGCATCAGTCAGGCCAA
CTGGGCAGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGCTGGTGCCTCACGGCCCACCCACGGACCTCCCTGGGCTGAGCCGAGAGGTCACACA
GGACGATCTGGACAGAATCCAGGCCCACCAGTGGCCAGGGGTGAATGGGTGTCAGGACAC
ACAGGGTAACTGGTATGACTGGACGCAGTGCATATCGCTCGACCCGCACGGCGACGACGG
GCGGTTGAACATTCTGCCTTATGTCTGCTTGGACTGACCGTCCCGCGGGCTCTAAGTGCA
TTCCCACCTTGCAGTTAGCCGTGGAGGGTGGGGCGCCAGGACCCTGCCACCTCCAGTGGT
TGGGAATCCAGGGAGTCCGGCCTGGGGCGGGAGGGAGGGGGCGAGAGTCTCTAGGTCTCT
CCGTGCTCTTCCCTCAAAATTCTCCTTCTTTTGTGAAATGCTGCTACCTGTTTACTAACA
AAATTGCAAAGGAAGGACCGTGTGGAAGGAAGGCCAGCAAAGTGAGTTCAGAACTCTATA
GCAAACCAGCTATAAAAAGCGTTAGTTCCCCACCTCAGAAGAGGTGTGGACGCTGCCCAG
CCCCCATGAGCTGGGACCTCAGTTGCACGCATGCAGAGAAAACCTGTGGAAGAGGTTACC
TTTAACACAGCAACAGAAGCACGCATCTCATCTCTTTGCATTTTCTGTTTTTTAATGTGG
CCCTGAGTGAGGCAGTGGGCCACACTGCAGTCTCTGTTTGCACCCCACCTGGCCAGCTTT
TCCATCGTGGGTGCCAGAAGCTTCTCAGCTATAGCAAGCTGCTGGCATCAGTCAGGCCAA
CTGGGCAGCAGT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-120, - strand, RNAz p=0.629252
               

               
               265-584, - strand, RNAz p=0.869374
               

               
               685-787, - strand, RNAz p=0.622499

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.629252
               

               
               265-584, - strand, RNAz p=0.869374
               

               
               685-787, - strand, RNAz p=0.622499

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               346-390, + strand, RNAmicro p=0.977451

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               346-390, + strand, RNAmicro p=0.977451

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-787, gnl|bosTau2|chr7 (5833002-5832230)
               

               
               1-787, gnl|Hg17|chr19 (16548054-16547241)
               

               
               1-787, gnl|Mm7|chr8 (71018810-71018131)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-787, gnl|bosTau2|chr7 (5833002-5832230)
               

               
               1-787, gnl|Hg17|chr19 (16548054-16547241)
               

               
               1-787, gnl|Mm7|chr8 (71018810-71018131)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               csp (0.161186)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)

	1-120, - strand, RNAz p=0.629252
	265-584, - strand, RNAz p=0.869374
	685-787, - strand, RNAz p=0.622499

	1-787, gnl\|bosTau2\|chr7 (5833002-5832230)
	1-787, gnl\|Hg17\|chr19 (16548054-16547241)
	1-787, gnl\|Mm7\|chr8 (71018810-71018131)