Non-Coding RNA Search

Ss1.1-rcst01_d4.5

Sequence:


               
               GAGAGAGACCGGTTGGTACTTTTCTTTTGCTGGGGGGTGGGGCCAGGAGAATGTTCTCCG
CCCCTGGCACAGCCGCTTGTAATGCTGCCCCTCGAGGACCGGGCCCCTCGAGGACCACCC
GCCGCTCCTAGGATGGTGGCCCCAGGGCCAGCCTCCTTCTCCACTCCCGGCCTGGGGGAA
GGCGCTTCGCTTGGTTTAGCTTTTGCTTCATAACCGGCCAGCCTGGCCTCCAGGTCTCAG
CACAAGAACGCTGCCTTTGCACAGAATGAGCATCAAGCTTTGTTCTGACTACATGAATGT
ATTCGGGAGGGTTGGGGGCGCGAGTCGGTTCAAGCACATGCCTTTGCCGAGTGCGCGTGT
GCAGGGAGAGCTAGAGCGGATGCAGAGTGTGGGTTTATTTTTGTACTGATATTGGTAAGA
GACTGTACAGCATCTATTTATTTAGATGATTTATCTGGTAAACGAGGCAAAAAATTATTA
AAAATACATTAAAGATGATTTTAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAGAGACCGGTTGGTACTTTTCTTTTGCTGGGGGGTGGGGCCAGGAGAATGTTCTCCG
CCCCTGGCACAGCCGCTTGTAATGCTGCCCCTCGAGGACCGGGCCCCTCGAGGACCACCC
GCCGCTCCTAGGATGGTGGCCCCAGGGCCAGCCTCCTTCTCCACTCCCGGCCTGGGGGAA
GGCGCTTCGCTTGGTTTAGCTTTTGCTTCATAACCGGCCAGCCTGGCCTCCAGGTCTCAG
CACAAGAACGCTGCCTTTGCACAGAATGAGCATCAAGCTTTGTTCTGACTACATGAATGT
ATTCGGGAGGGTTGGGGGCGCGAGTCGGTTCAAGCACATGCCTTTGCCGAGTGCGCGTGT
GCAGGGAGAGCTAGAGCGGATGCAGAGTGTGGGTTTATTTTTGTACTGATATTGGTAAGA
GACTGTACAGCATCTATTTATTTAGATGATTTATCTGGTAAACGAGGCAAAAAATTATTA
AAAATACATTAAAGATGATTTTAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               124-229, - strand, RNAz p=0.985175

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-229, - strand, RNAz p=0.985175

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-511, gnl|bosTau2|chr5 (69568259-69567750)
               

               
               4-511, gnl|Hg17|chr22 (37851773-37851278)
               

               
               4-511, gnl|Mm7|chr15 (80000430-79999937)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-511, gnl|bosTau2|chr5 (69568259-69567750)
               

               
               4-511, gnl|Hg17|chr22 (37851773-37851278)
               

               
               4-511, gnl|Mm7|chr15 (80000430-79999937)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               cmu (0.55918)
               

               
               cst (0.280073)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               cst (0.280073)
               

               
               cli (0.152812)
               

               
               che (0.136314)
               

               
               pgl (0.118483)

	4-511, gnl\|bosTau2\|chr5 (69568259-69567750)
	4-511, gnl\|Hg17\|chr22 (37851773-37851278)
	4-511, gnl\|Mm7\|chr15 (80000430-79999937)

	cmu (0.55918)
	cst (0.280073)
	cli (0.152812)
	che (0.136314)
	pgl (0.118483)