Ss1.1-rcst01_l10.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCATTGCATTGGTGAAGCCAAGATGAAGTTCACAATTGCCTTTGCTGGACTTCTTGGTGT CTTCCTGACTCCTGCCCTTGCTGACTATAGTATCAGTGTCAACGACGACGGCAACAGTGG TGGAAGTGGGCAGCAGTCAGTGAGTGTCAACAATGAACACAACGTGGCCAACGTTGACAA TAACAATGGATGGAACTCCTGGAATGCCCTCTGGGACTATAGAACTGGCTTTGCTGTAAC CAGACTCTTCGAGAAGAAGTCATGCATTGTGCACAAAATGAAGAAGGAAGCCATGCCCTC CCTTCAAGCCCTTGATGCGCTGGTCAAGGAAAAGAAGCTTCAGGGTAAGGGCCCAGGGGG ACCACCTCCCAAGAGCCTGAGGTACTCAGTCAACCCCAACAGAGTCGACAACCTGGACAA GTTTGGAAAATCCATCGTTGCCATGTGCAAGGGGATTCCAACATACATGGCTGAAGAGAT TCAAGGAGCAAACCTGATTTCGTACTCAGAAAAGTGCATCAGTGCCAATATACTCTGGAT TCTTAACATTTCCTTCTGTGGAGGAATAGCGGAGAACTAAAAAAAAGAAAGAAAGAAAAA AATTTGCTATGGGTTTAGCCATCAAGAATATTCTAGGCAGAAATTATGGGTTCTAATGGT TTTTATCTTGTCATTCTGAAATGTTTTCTTCTAGTTGAAGTCTAAATAAACCTATTTAGC ACTGAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCATTGCATTGGTGAAGCCAAGATGAAGTTCACAATTGCCTTTGCTGGACTTCTTGGTGT CTTCCTGACTCCTGCCCTTGCTGACTATAGTATCAGTGTCAACGACGACGGCAACAGTGG TGGAAGTGGGCAGCAGTCAGTGAGTGTCAACAATGAACACAACGTGGCCAACGTTGACAA TAACAATGGATGGAACTCCTGGAATGCCCTCTGGGACTATAGAACTGGCTTTGCTGTAAC CAGACTCTTCGAGAAGAAGTCATGCATTGTGCACAAAATGAAGAAGGAAGCCATGCCCTC CCTTCAAGCCCTTGATGCGCTGGTCAAGGAAAAGAAGCTTCAGGGTAAGGGCCCAGGGGG ACCACCTCCCAAGAGCCTGAGGTACTCAGTCAACCCCAACAGAGTCGACAACCTGGACAA GTTTGGAAAATCCATCGTTGCCATGTGCAAGGGGATTCCAACATACATGGCTGAAGAGAT TCAAGGAGCAAACCTGATTTCGTACTCAGAAAAGTGCATCAGTGCCAATATACTCTGGAT TCTTAACATTTCCTTCTGTGGAGGAATAGCGGAGAACTAAAAAAAAGAAAGAAAGAAAAA AATTTGCTATGGGTTTAGCCATCAAGAATATTCTAGGCAGAAATTATGGGTTCTAATGGT TTTTATCTTGTCATTCTGAAATGTTTTCTTCTAGTTGAAGTCTAAATAAACCTATTTAGC ACTGAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 336-439, - strand, RNAz p=0.667181 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 336-439, - strand, RNAz p=0.667181 |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 91-227, gnl|bosTau2|chr11 (49382123-49381987) | |
| 91-227, gnl|canFam2|chr10 (70943528-70943740) | |
| 91-227, gnl|echTel1|scaffold_256809 (8742-8528) | |
| 91-227, gnl|hg17|chr2 (69116362-69116574) | |
| 91-227, gnl|Hg17|chr2 (69116422-69116558) | |
| 91-227, gnl|loxAfr1|scaffold_35747 (11572-11785) | |
| 91-227, gnl|mm7|chr6 (87424290-87424074) | |
| 91-227, gnl|Mm7|chr6 (87424227-87424088) | |
| 91-227, gnl|monDom2|scaffold_1 (95542079-95542291) | |
| 91-227, gnl|oryCun1|scaffold_203292 (166151-166363) | |
| 91-227, gnl|panTro1|chr12 (71351170-71351384) | |
| 91-227, gnl|rheMac2|chr13 (69204786-69204998) | |
| 91-227, gnl|rn3|chr4 (121744170-121743960) | |
| 336-486, gnl|bosTau2|chr11 (49379500-49379350) | |
| 336-486, gnl|canFam2|chr10 (70945665-70945909) | |
| 336-486, gnl|dasNov1|scaffold_1790 (150293-150549) | |
| 336-486, gnl|echTel1|scaffold_289198 (41795-42037) | |
| 336-486, gnl|hg17|chr2 (69118605-69118862) | |
| 336-486, gnl|Hg17|chr2 (69118694-69118844) | |
| 336-486, gnl|loxAfr1|scaffold_35747 (13851-14107) | |
| 336-486, gnl|mm7|chr6 (87422380-87422136) | |
| 336-486, gnl|Mm7|chr6 (87422303-87422153) | |
| 336-486, gnl|monDom2|scaffold_1 (95544808-95545042) | |
| 336-486, gnl|oryCun1|scaffold_203292 (168195-168447) | |
| 336-486, gnl|panTro1|chr12 (71353440-71353697) | |
| 336-486, gnl|rn3|chr4 (121741751-121741514) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-227, gnl|bosTau2|chr11 (49382123-49381987) | |
| 91-227, gnl|canFam2|chr10 (70943528-70943740) | |
| 91-227, gnl|echTel1|scaffold_256809 (8742-8528) | |
| 91-227, gnl|hg17|chr2 (69116362-69116574) | |
| 91-227, gnl|Hg17|chr2 (69116422-69116558) | |
| 91-227, gnl|loxAfr1|scaffold_35747 (11572-11785) | |
| 91-227, gnl|mm7|chr6 (87424290-87424074) | |
| 91-227, gnl|Mm7|chr6 (87424227-87424088) | |
| 91-227, gnl|monDom2|scaffold_1 (95542079-95542291) | |
| 91-227, gnl|oryCun1|scaffold_203292 (166151-166363) | |
| 91-227, gnl|panTro1|chr12 (71351170-71351384) | |
| 91-227, gnl|rheMac2|chr13 (69204786-69204998) | |
| 91-227, gnl|rn3|chr4 (121744170-121743960) | |
| 336-486, gnl|bosTau2|chr11 (49379500-49379350) | |
| 336-486, gnl|canFam2|chr10 (70945665-70945909) | |
| 336-486, gnl|dasNov1|scaffold_1790 (150293-150549) | |
| 336-486, gnl|echTel1|scaffold_289198 (41795-42037) | |
| 336-486, gnl|hg17|chr2 (69118605-69118862) | |
| 336-486, gnl|Hg17|chr2 (69118694-69118844) | |
| 336-486, gnl|loxAfr1|scaffold_35747 (13851-14107) | |
| 336-486, gnl|mm7|chr6 (87422380-87422136) | |
| 336-486, gnl|Mm7|chr6 (87422303-87422153) | |
| 336-486, gnl|monDom2|scaffold_1 (95544808-95545042) | |
| 336-486, gnl|oryCun1|scaffold_203292 (168195-168447) | |
| 336-486, gnl|panTro1|chr12 (71353440-71353697) | |
| 336-486, gnl|rn3|chr4 (121741751-121741514) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| sto (91.8899) | |
| cst (35.5692) | |
| lin (0.291206) | |
| duo (0.172801) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (91.8899) | |
| cst (35.5692) | |
| lin (0.291206) | |
| duo (0.172801) |