Ss1.1-rcst01_n6.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAGACTTGGGAGCCAGGAAGAACCATGAAGTGGCTACTGCTGCTCAGCTTGGTGGTGC TCTCCGAGTGCCTCGTCAAGGTCCCGCTGGTCAGGAAGAAGTCCTTGAGGCAGAACCTGA TCAAGAATGGCAAGCTGAAGGACTTCCTGAAGACCCACAAACACAACCCGGCCAGCAAGT ACTTCCCCGAGGCCGCTGCCCTGATAGGCGATGAGCCCCTTGAGAACTACCTGGATACTG AGTACTTCGGCACCATCGGCATTGGAACCCCCGCTCAGGACTTCACCGTCATCTTTGACA CCGGCTCCTCCAACCTGTGGGTGCCCTCTGTCTACTGCTCTAGTCTCGCCTGCAGCGACC ACAACCAGTTCAACCCTGATGACTCCTCCACCTTCGAGGCCACCAGCCAGGAGCTGTCCA TCACCTATGGCACCGGTAGCATGACAGGCATCCTTGGATACGACACCGTCCAGGTCGGAG GCATCAGCGACACCAACCAGATCTTTGGCCTGAGCGAGACAGAGCCCGGCTCCTTCCTGT ACTACGCCCCCTTCGACGGCATCCTGGGTCTGGCCTACCCCAGCATCTCCGCCTCCGGGG CCACCCCTGTCTTTGACAACCTGTGGGACCAGGGCCTGGTTTCCCAAGACCTCTTCTCTG TCTACCTGAGCTCCAATGACGATAGCGGCAGCGTGGTGTTGTTGGGCGGCATCGATTCTT CTTACTACACAGGAAGCCTGAACTGGGTGCCTGTTTCCGTCGAGGGTTACTGGCAGATTA CCTTGGACAGCATCACCATGGATGGAGAGACCATCGCTTGCAGCGGTGGCTGCCAGGCCA TCGTGGACACGGGCACCTCTCTGCTGACCGGCCCCACCAGTGCCATTGCCAACATCCAGA GCGACATCGGAGCCAGCGAGAACTCAGATGGCGAGATGGTGATCAGCTGCTCCTCCATCG ACAGCCTGCCTGACATCGTCTTCACCATCAACGGTGTCCAGTACCCTCTGAGCCCCAGTG CCTACATCCTGCAGGACGATGACAGCTGCACCAGCGGCTTCGAGGGCATGGATGTCCCCA CCTCCTCCGGAGAGCTCTGGATCCTGGGTGACGTCTTCATCCGCCAGTACTACACCGTCT TTGACAGGGCCAACAACAAGGTCGGCCTGGCTCCCGTGGCCTGAGCCTGCGTCTCTCCAG CCACCTCCCAGGAAGATCCCGCCTTGGTTCTATCCCCGCGCTTCCATGTAGATAATTCTG ATCGCTTTCCCTCTGGGATCGTGGAGGTGGAATCTTGGTCCTGTTCCCTGTCACACCAAT AACGTAGAATAAATCATCACCTCCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAGACTTGGGAGCCAGGAAGAACCATGAAGTGGCTACTGCTGCTCAGCTTGGTGGTGC TCTCCGAGTGCCTCGTCAAGGTCCCGCTGGTCAGGAAGAAGTCCTTGAGGCAGAACCTGA TCAAGAATGGCAAGCTGAAGGACTTCCTGAAGACCCACAAACACAACCCGGCCAGCAAGT ACTTCCCCGAGGCCGCTGCCCTGATAGGCGATGAGCCCCTTGAGAACTACCTGGATACTG AGTACTTCGGCACCATCGGCATTGGAACCCCCGCTCAGGACTTCACCGTCATCTTTGACA CCGGCTCCTCCAACCTGTGGGTGCCCTCTGTCTACTGCTCTAGTCTCGCCTGCAGCGACC ACAACCAGTTCAACCCTGATGACTCCTCCACCTTCGAGGCCACCAGCCAGGAGCTGTCCA TCACCTATGGCACCGGTAGCATGACAGGCATCCTTGGATACGACACCGTCCAGGTCGGAG GCATCAGCGACACCAACCAGATCTTTGGCCTGAGCGAGACAGAGCCCGGCTCCTTCCTGT ACTACGCCCCCTTCGACGGCATCCTGGGTCTGGCCTACCCCAGCATCTCCGCCTCCGGGG CCACCCCTGTCTTTGACAACCTGTGGGACCAGGGCCTGGTTTCCCAAGACCTCTTCTCTG TCTACCTGAGCTCCAATGACGATAGCGGCAGCGTGGTGTTGTTGGGCGGCATCGATTCTT CTTACTACACAGGAAGCCTGAACTGGGTGCCTGTTTCCGTCGAGGGTTACTGGCAGATTA CCTTGGACAGCATCACCATGGATGGAGAGACCATCGCTTGCAGCGGTGGCTGCCAGGCCA TCGTGGACACGGGCACCTCTCTGCTGACCGGCCCCACCAGTGCCATTGCCAACATCCAGA GCGACATCGGAGCCAGCGAGAACTCAGATGGCGAGATGGTGATCAGCTGCTCCTCCATCG ACAGCCTGCCTGACATCGTCTTCACCATCAACGGTGTCCAGTACCCTCTGAGCCCCAGTG CCTACATCCTGCAGGACGATGACAGCTGCACCAGCGGCTTCGAGGGCATGGATGTCCCCA CCTCCTCCGGAGAGCTCTGGATCCTGGGTGACGTCTTCATCCGCCAGTACTACACCGTCT TTGACAGGGCCAACAACAAGGTCGGCCTGGCTCCCGTGGCCTGAGCCTGCGTCTCTCCAG CCACCTCCCAGGAAGATCCCGCCTTGGTTCTATCCCCGCGCTTCCATGTAGATAATTCTG ATCGCTTTCCCTCTGGGATCGTGGAGGTGGAATCTTGGTCCTGTTCCCTGTCACACCAAT AACGTAGAATAAATCATCACCTCCTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 238-358, gnl|bosTau2|chr23 (15277121-15277001) | |
| 238-358, gnl|canFam2|chr12 (13434974-13435110) | |
| 238-358, gnl|dasNov1|scaffold_14997 (5912-5784) | |
| 238-358, gnl|echTel1|scaffold_310249 (129277-129412) | |
| 238-358, gnl|fr1|chrUn (23926519-23926654) | |
| 238-358, gnl|galGal2|chr26 (3423718-3423853) | |
| 238-358, gnl|hg17|chr6 (41820106-41820241) | |
| 238-358, gnl|Hg17|chr6 (41820229-41820109) | |
| 238-358, gnl|loxAfr1|scaffold_14670 (7905-8040) | |
| 238-358, gnl|mm7|chr17 (45865918-45865781) | |
| 238-358, gnl|Mm7|chr17 (45865793-45865913) | |
| 238-358, gnl|monDom2|scaffold_42 (1251295-1251164) | |
| 238-358, gnl|oryCun1|scaffold_210069 (11673-11536) | |
| 238-358, gnl|panTro1|chr5 (42394552-42394687) | |
| 238-358, gnl|rheMac2|chr19 (56539145-56539280) | |
| 238-358, gnl|rn3|chr9 (8728636-8728773) | |
| 238-358, gnl|tetNig1|chrUn_random (80117764-80117630) | |
| 238-358, gnl|xenTro1|scaffold_19 (1446917-1446782) | |
| 471-671, gnl|bosTau2|chr29 (30825582-30825782) | |
| 471-671, gnl|canFam2|chr18 (58165681-58165450) | |
| 471-671, gnl|danRer3|chr18 (16789755-16789983) | |
| 471-671, gnl|dasNov1|scaffold_30026 (14158-13937) | |
| 471-671, gnl|echTel1|scaffold_286890 (49171-48941) | |
| 471-671, gnl|fr1|chrUn (23925936-23925726) | |
| 471-671, gnl|galGal2|chrUn (135425110-135425329) | |
| 471-671, gnl|hg17|chr11 (60732314-60732546) | |
| 471-671, gnl|Hg17|chr11 (60732336-60732536) | |
| 471-671, gnl|loxAfr1|scaffold_18105 (19628-19399) | |
| 471-671, gnl|mm7|chr19 (10353976-10353759) | |
| 471-671, gnl|Mm7|chr19 (10353965-10353765) | |
| 471-671, gnl|monDom2|scaffold_42 (1172839-1173054) | |
| 471-671, gnl|oryCun1|scaffold_210069 (13476-13695) | |
| 471-671, gnl|panTro1|chr9 (61667675-61667907) | |
| 471-671, gnl|rheMac2|chr14 (12905720-12905488) | |
| 471-671, gnl|rn3|chr1 (213327959-213327742) | |
| 471-671, gnl|tetNig1|chrUn_random (85060171-85059952) | |
| 471-671, gnl|xenTro1|scaffold_525 (129246-129034) | |
| 788-934, gnl|bosTau2|chr29 (30829028-30829174) | |
| 788-934, gnl|Hg17|chr11 (60735135-60735281) | |
| 788-934, gnl|Mm7|chr19 (10349800-10349654) | |
| 1027-1351, gnl|bosTau2|chr29 (30830605-30830931) | |
| 1027-1351, gnl|Hg17|chr11 (60736593-60736915) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 238-358, gnl|bosTau2|chr23 (15277121-15277001) | |
| 238-358, gnl|canFam2|chr12 (13434974-13435110) | |
| 238-358, gnl|dasNov1|scaffold_14997 (5912-5784) | |
| 238-358, gnl|echTel1|scaffold_310249 (129277-129412) | |
| 238-358, gnl|fr1|chrUn (23926519-23926654) | |
| 238-358, gnl|galGal2|chr26 (3423718-3423853) | |
| 238-358, gnl|hg17|chr6 (41820106-41820241) | |
| 238-358, gnl|Hg17|chr6 (41820229-41820109) | |
| 238-358, gnl|loxAfr1|scaffold_14670 (7905-8040) | |
| 238-358, gnl|mm7|chr17 (45865918-45865781) | |
| 238-358, gnl|Mm7|chr17 (45865793-45865913) | |
| 238-358, gnl|monDom2|scaffold_42 (1251295-1251164) | |
| 238-358, gnl|oryCun1|scaffold_210069 (11673-11536) | |
| 238-358, gnl|panTro1|chr5 (42394552-42394687) | |
| 238-358, gnl|rheMac2|chr19 (56539145-56539280) | |
| 238-358, gnl|rn3|chr9 (8728636-8728773) | |
| 238-358, gnl|tetNig1|chrUn_random (80117764-80117630) | |
| 238-358, gnl|xenTro1|scaffold_19 (1446917-1446782) | |
| 471-671, gnl|bosTau2|chr29 (30825582-30825782) | |
| 471-671, gnl|canFam2|chr18 (58165681-58165450) | |
| 471-671, gnl|danRer3|chr18 (16789755-16789983) | |
| 471-671, gnl|dasNov1|scaffold_30026 (14158-13937) | |
| 471-671, gnl|echTel1|scaffold_286890 (49171-48941) | |
| 471-671, gnl|fr1|chrUn (23925936-23925726) | |
| 471-671, gnl|galGal2|chrUn (135425110-135425329) | |
| 471-671, gnl|hg17|chr11 (60732314-60732546) | |
| 471-671, gnl|Hg17|chr11 (60732336-60732536) | |
| 471-671, gnl|loxAfr1|scaffold_18105 (19628-19399) | |
| 471-671, gnl|mm7|chr19 (10353976-10353759) | |
| 471-671, gnl|Mm7|chr19 (10353965-10353765) | |
| 471-671, gnl|monDom2|scaffold_42 (1172839-1173054) | |
| 471-671, gnl|oryCun1|scaffold_210069 (13476-13695) | |
| 471-671, gnl|panTro1|chr9 (61667675-61667907) | |
| 471-671, gnl|rheMac2|chr14 (12905720-12905488) | |
| 471-671, gnl|rn3|chr1 (213327959-213327742) | |
| 471-671, gnl|tetNig1|chrUn_random (85060171-85059952) | |
| 471-671, gnl|xenTro1|scaffold_525 (129246-129034) | |
| 788-934, gnl|bosTau2|chr29 (30829028-30829174) | |
| 788-934, gnl|Hg17|chr11 (60735135-60735281) | |
| 788-934, gnl|Mm7|chr19 (10349800-10349654) | |
| 1027-1351, gnl|bosTau2|chr29 (30830605-30830931) | |
| 1027-1351, gnl|Hg17|chr11 (60736593-60736915) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (33.3287) | |
| sto (5.57454) | |
| duo (0.172801) |