Non-Coding RNA Search

Ss1.1-rcst02_a8.5

Sequence:


               
               CAGCCTGGTCCTTCCCCAGGAGAGTGGGCTACCAGACAGACTCCGTCAGGAGGGGAGGAG
GAGGGGCGGTTGGCGGAGGTGCCGGCCCTCAGAGGGGACAGGGACAGGGAGCAGGAGCAG
CTGGCCGAGCCGGCACTTCCCCTTCATCTCTCCAGGCTGTGCCCCCGCCCCCTGCCAGGT
CTGGGTTAGCGCTAATGGAAATGCAGGCTCCATCCTCCTTGGTTGTTGTATTTTCAAGTC
ACAAGCTGGAAGAGGTTCTCCCTTCTAGGGACTGGTCACCGGTTTCTAAGTTGTGGATAG
GTGACGCCAGTACTCTCAGGGCCTGCCTGTGTAACCTCGCTTGTTTGTGACCAATCTCCT
GTCACCTTCCTCAGGGCAGGTGGGCACCACTGTCAGCTAGTGACAGCTCCTGCTGCAGTG
TGCTGTATTACTTGAAATTTGAGTGCTGTGGCAGTACAGGAAGGGGAGGGTGGAGGCTTT
GGGGCGGAGACTAGATCAATGGGTGACAGCTGGGAGTTTGGGACAGTTGGTGATGGACCT
AGGCCTGGTCGCCTACTTGTGCCTACTAGATACAGTGTTATACCCTGGAAGGCCAGCCCT
GGGTGGCACGCGGCCTCCTGAGGGGGAGCTGGCCCCCAAGGTGTCTCCTCCTCCTCCTCC
CTCCATGTCACCGCGGCGGATCCTGCAGGCCCCTGTTAAGCTGGGGAGTGAGCAGAGATG
GTGGCCACCCCCCTACAGCGCACATCCAGGAAGAGTTGCGGGGGTGGGGGGGGGGCGTTA
TGTCCCAGATCCAGATGTGAGAGACTAGAGCAGAGCCCGGAGCCCTGGGCGCCAGCCTCT
TCAGTCCTCACCCCGGACCCCTAAAGAGCACGGCCTGCTTGGAGCTCTGGGCCCAGCAGA
AACGGGGATGGGATGGGAGGAACCTGTGTCCTAGGTTAGATCCTCCCCCGCCCTGCTGCC
TCTCCCTTGGCTTTGAGCCCTGAAGTGGGGCCTGGGCGCTGGGCCGTATAGCTCCATGGC
TGGGAGGTGGTCTGAAGTGAGTGTGTGTATGTGTGTGTGTGTGTGTCCATGTGTGTCTGA
ATCTTCATTGGCAGAAGTCTTGCCACGTTGGGGTGTTGAGAGCATCTCCGCTGGGGGGAC
ACCTGCCGTTTGTCGTCTACTTTTAAAGAGAATGACGTGCCCCCTGTCCCTAAGGGAGGA
ACTTTTGAGTTAGACATTTTCCCTATGGGAATCCTCTTGGTTTGGTTTGTGGGAAAGGGG
GAAATGGATAAATGATTTTTATCTCTAATTGTCAACACAGCTGTTCTTACACTGAATTTG
TGCTATTGCATACATGTAGCCATCTTTCTTTTCACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCTGGTCCTTCCCCAGGAGAGTGGGCTACCAGACAGACTCCGTCAGGAGGGGAGGAG
GAGGGGCGGTTGGCGGAGGTGCCGGCCCTCAGAGGGGACAGGGACAGGGAGCAGGAGCAG
CTGGCCGAGCCGGCACTTCCCCTTCATCTCTCCAGGCTGTGCCCCCGCCCCCTGCCAGGT
CTGGGTTAGCGCTAATGGAAATGCAGGCTCCATCCTCCTTGGTTGTTGTATTTTCAAGTC
ACAAGCTGGAAGAGGTTCTCCCTTCTAGGGACTGGTCACCGGTTTCTAAGTTGTGGATAG
GTGACGCCAGTACTCTCAGGGCCTGCCTGTGTAACCTCGCTTGTTTGTGACCAATCTCCT
GTCACCTTCCTCAGGGCAGGTGGGCACCACTGTCAGCTAGTGACAGCTCCTGCTGCAGTG
TGCTGTATTACTTGAAATTTGAGTGCTGTGGCAGTACAGGAAGGGGAGGGTGGAGGCTTT
GGGGCGGAGACTAGATCAATGGGTGACAGCTGGGAGTTTGGGACAGTTGGTGATGGACCT
AGGCCTGGTCGCCTACTTGTGCCTACTAGATACAGTGTTATACCCTGGAAGGCCAGCCCT
GGGTGGCACGCGGCCTCCTGAGGGGGAGCTGGCCCCCAAGGTGTCTCCTCCTCCTCCTCC
CTCCATGTCACCGCGGCGGATCCTGCAGGCCCCTGTTAAGCTGGGGAGTGAGCAGAGATG
GTGGCCACCCCCCTACAGCGCACATCCAGGAAGAGTTGCGGGGGTGGGGGGGGGGCGTTA
TGTCCCAGATCCAGATGTGAGAGACTAGAGCAGAGCCCGGAGCCCTGGGCGCCAGCCTCT
TCAGTCCTCACCCCGGACCCCTAAAGAGCACGGCCTGCTTGGAGCTCTGGGCCCAGCAGA
AACGGGGATGGGATGGGAGGAACCTGTGTCCTAGGTTAGATCCTCCCCCGCCCTGCTGCC
TCTCCCTTGGCTTTGAGCCCTGAAGTGGGGCCTGGGCGCTGGGCCGTATAGCTCCATGGC
TGGGAGGTGGTCTGAAGTGAGTGTGTGTATGTGTGTGTGTGTGTGTCCATGTGTGTCTGA
ATCTTCATTGGCAGAAGTCTTGCCACGTTGGGGTGTTGAGAGCATCTCCGCTGGGGGGAC
ACCTGCCGTTTGTCGTCTACTTTTAAAGAGAATGACGTGCCCCCTGTCCCTAAGGGAGGA
ACTTTTGAGTTAGACATTTTCCCTATGGGAATCCTCTTGGTTTGGTTTGTGGGAAAGGGG
GAAATGGATAAATGATTTTTATCTCTAATTGTCAACACAGCTGTTCTTACACTGAATTTG
TGCTATTGCATACATGTAGCCATCTTTCTTTTCACT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               761-876, - strand, RNAz p=0.999333
               

               
               1147-1264, + strand, RNAz p=0.580443

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               761-876, - strand, RNAz p=0.999333
               

               
               1147-1264, + strand, RNAz p=0.580443

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               106-1356, gnl|bosTau2|chr19 (32848491-32849719)
               

               
               106-1356, gnl|Hg17|chr17 (33812122-33813682)
               

               
               106-1356, gnl|Mm7|chr11 (97504941-97506024)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               106-1356, gnl|bosTau2|chr19 (32848491-32849719)
               

               
               106-1356, gnl|Hg17|chr17 (33812122-33813682)
               

               
               106-1356, gnl|Mm7|chr11 (97504941-97506024)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               eje (0.0988338)

	761-876, - strand, RNAz p=0.999333
	1147-1264, + strand, RNAz p=0.580443

	106-1356, gnl\|bosTau2\|chr19 (32848491-32849719)
	106-1356, gnl\|Hg17\|chr17 (33812122-33813682)
	106-1356, gnl\|Mm7\|chr11 (97504941-97506024)