Non-Coding RNA Search

Ss1.1-rcst02_d23.5

Sequence:


               
               CATTATGTATCATTATGTAACAGTAGAAGAAACAGAAGCCTGTTTTGTCCCTGTTCAGGA
GCTAGTTAACAGCAGATCAAAATGGAAGCAGGGCAATCTTGATTTCAGTAGGCACTTCTA
TGAACAACCTACTGTTCTCTTATGTGTAGGCACTGAGAAGTGCTTTACCCACTTTCTCTT
AGGTGGTCTTCTTATATTTTGTTTTGAATTTTAGAATTAGTGAAGAGTTCTGGCTATTGA
ATTAACTTTAGTGAATGTACTGGAATATTGGTACATAAGAAAAGTATTCAAGAATGAATT
TCTCACCTAAGCAATTTATGCTGCCATATACTGCCAAATACCGAAGGATTCAGATATTCC
TGGCATTTTTTTTGTATTTTCACATCTTAATAGTGGATATAAATCCATATTTTATAGTTT
TCTTATAATTTCAAATTATTTTGTCTGATTTCTTACCAGGTGTATCTATCTTATAAAGGG
CCTGGCAAAGAACTAAGAGAATTTAAAGTATCATCTCTTTATTTTCTTGTTTGCTTATAA
TTTGCATTAGTAATATTACCTGCAGTATCTTTGCAGGAATATACTTAAACAACTTTCTAT
TTTGAGAGAATTCATTTTGTTAAAGCTAAATAACGTTTTGACATAACCAGAAAGGGACAA
GTAGGGCATCATTGGTAGGTGGGCCTGTGGAGTTCCTCTTGCCTCAGGAGACCTTGAGCA
GCATAAGTAAACATCTGATGTGTAAACCAAGGGGCCATAGGAGCAGTCTGAATATTAACT
ATTCATTAAGATTAGTTAATTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTATGTATCATTATGTAACAGTAGAAGAAACAGAAGCCTGTTTTGTCCCTGTTCAGGA
GCTAGTTAACAGCAGATCAAAATGGAAGCAGGGCAATCTTGATTTCAGTAGGCACTTCTA
TGAACAACCTACTGTTCTCTTATGTGTAGGCACTGAGAAGTGCTTTACCCACTTTCTCTT
AGGTGGTCTTCTTATATTTTGTTTTGAATTTTAGAATTAGTGAAGAGTTCTGGCTATTGA
ATTAACTTTAGTGAATGTACTGGAATATTGGTACATAAGAAAAGTATTCAAGAATGAATT
TCTCACCTAAGCAATTTATGCTGCCATATACTGCCAAATACCGAAGGATTCAGATATTCC
TGGCATTTTTTTTGTATTTTCACATCTTAATAGTGGATATAAATCCATATTTTATAGTTT
TCTTATAATTTCAAATTATTTTGTCTGATTTCTTACCAGGTGTATCTATCTTATAAAGGG
CCTGGCAAAGAACTAAGAGAATTTAAAGTATCATCTCTTTATTTTCTTGTTTGCTTATAA
TTTGCATTAGTAATATTACCTGCAGTATCTTTGCAGGAATATACTTAAACAACTTTCTAT
TTTGAGAGAATTCATTTTGTTAAAGCTAAATAACGTTTTGACATAACCAGAAAGGGACAA
GTAGGGCATCATTGGTAGGTGGGCCTGTGGAGTTCCTCTTGCCTCAGGAGACCTTGAGCA
GCATAAGTAAACATCTGATGTGTAAACCAAGGGGCCATAGGAGCAGTCTGAATATTAACT
ATTCATTAAGATTAGTTAATTTCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               275-414, - strand, RNAz p=0.6591
               

               
               493-585, + strand, RNAz p=0.998994

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               275-414, - strand, RNAz p=0.6591
               

               
               493-585, + strand, RNAz p=0.998994

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               3-802, gnl|bosTau2|chr2 (42712175-42711382)
               

               
               3-802, gnl|Hg17|chr2 (196839240-196838408)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-802, gnl|bosTau2|chr2 (42712175-42711382)
               

               
               3-802, gnl|Hg17|chr2 (196839240-196838408)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               cty (0.10408)

	275-414, - strand, RNAz p=0.6591
	493-585, + strand, RNAz p=0.998994

	3-802, gnl\|bosTau2\|chr2 (42712175-42711382)
	3-802, gnl\|Hg17\|chr2 (196839240-196838408)