Ss1.1-rcst02_e16.5
|
GGAGCCCAAGCCCCACCCTTCTCCTTCTTTGGGGGGGGTCCACCCGACCAGTTGGGCCCT
TGCTGTACGTGGTGGGGACTGAAGCAAAGGGGAGACCCCCCCATCCCAAGCTCCCCCTTC
CTCCTGGGCATTTGCCCTGGGGAGGGGGGTTGGGGGGGAGCTTGGATACCCTTCCAGGGG
TCTCCCGCTTTTCCACGCCCCTCTTTTGCTTCTGACCACCGCCCTGGGCAGCTTCTCTTT
CCTTTGCTGCCAGGGAGCTGAGGTGTCAGTGGCAGAGACCAAAGCCCCAGTTTACGGCTT
GGGCCCTGGGAGGCAGGCAGGCCAAAGGAGGAATGGGCCGGGGGTCTGCTGCTTGGGGGA
GGCAGCCTGGCTGGCCAGCCCTGGCGCCCTGCCTGGGCTCGGCTTGGCCTGAGTGGCGGG
GCTTTGCACGCGGCTCCAGGTGACTTCCTGGTGTGTCAGCTCAGAGTCACGATGGCAGAA
GGAGGAGACAGAAAGGGAATTCGGTTCGGTAACAAACGCCTTGTCCGAAGCACGGGAGGA
CTCTTCCTTCCAAACCTCTCCGGCGGGGGCTGCAGCGTGGCCCTGTCCCTCCTCACCCCG
GATGTAGAACGAGGGCCGGCACAGGGTCTGGGGGGCTGGTGCTCCTGGACCCCTCCCCAC
CCTGCCCTTTGTGTTGGCTCCGTGGCCGTCCAAGTGCCAATTGGCTCCCCCCAAATAAGG
GCTGGTATCTCTCCTCTGTCCCCGGAGGTGATTGCCCCCAACCCCCACCCCAGGTGAGCG
TCCACCTGGGTGCCAGTTACAGGTGTTTCCAGAGACCATAGAAATGTGTTTTCCTGAGAG
TCTGTGTCATTCGTGACTTTTTTTGTAAAGAAGTTGTGTTTTCAGAGGTGATTTTATGAC
AGGAAAGTGAAAGAATTAGTTTTGCAGAAAACAGAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGAGCCCAAGCCCCACCCTTCTCCTTCTTTGGGGGGGGTCCACCCGACCAGTTGGGCCCT
TGCTGTACGTGGTGGGGACTGAAGCAAAGGGGAGACCCCCCCATCCCAAGCTCCCCCTTC
CTCCTGGGCATTTGCCCTGGGGAGGGGGGTTGGGGGGGAGCTTGGATACCCTTCCAGGGG
TCTCCCGCTTTTCCACGCCCCTCTTTTGCTTCTGACCACCGCCCTGGGCAGCTTCTCTTT
CCTTTGCTGCCAGGGAGCTGAGGTGTCAGTGGCAGAGACCAAAGCCCCAGTTTACGGCTT
GGGCCCTGGGAGGCAGGCAGGCCAAAGGAGGAATGGGCCGGGGGTCTGCTGCTTGGGGGA
GGCAGCCTGGCTGGCCAGCCCTGGCGCCCTGCCTGGGCTCGGCTTGGCCTGAGTGGCGGG
GCTTTGCACGCGGCTCCAGGTGACTTCCTGGTGTGTCAGCTCAGAGTCACGATGGCAGAA
GGAGGAGACAGAAAGGGAATTCGGTTCGGTAACAAACGCCTTGTCCGAAGCACGGGAGGA
CTCTTCCTTCCAAACCTCTCCGGCGGGGGCTGCAGCGTGGCCCTGTCCCTCCTCACCCCG
GATGTAGAACGAGGGCCGGCACAGGGTCTGGGGGGCTGGTGCTCCTGGACCCCTCCCCAC
CCTGCCCTTTGTGTTGGCTCCGTGGCCGTCCAAGTGCCAATTGGCTCCCCCCAAATAAGG
GCTGGTATCTCTCCTCTGTCCCCGGAGGTGATTGCCCCCAACCCCCACCCCAGGTGAGCG
TCCACCTGGGTGCCAGTTACAGGTGTTTCCAGAGACCATAGAAATGTGTTTTCCTGAGAG
TCTGTGTCATTCGTGACTTTTTTTGTAAAGAAGTTGTGTTTTCAGAGGTGATTTTATGAC
AGGAAAGTGAAAGAATTAGTTTTGCAGAAAACAGAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
621-698, + strand, RNAmicro p=0.992213 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
621-698, + strand, RNAmicro p=0.992213 |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
eep (0.367692) |
|
cut (0.339847) |
|
hyp (0.285673) |
|
cst (0.280073) |
|
ece (0.229305) |
|
cmu (0.186393) |
|
fco (0.157208) |
|
cag (0.151194) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |
|
eep (0.367692) |
|
cut (0.339847) |
|
hyp (0.285673) |
|
cst (0.280073) |
|
ece (0.229305) |
|
cmu (0.186393) |
|
fco (0.157208) |
|
cag (0.151194) |
|
ebs (0.118301) |
|
med (0.116252) |
|
ecc (0.115035) |