Non-Coding RNA Search

Ss1.1-rcst02_i8.5

Sequence:


               
               GTTCATTGACGAAATCCACAGCATGAGTGCCAAGAACAGGGCAGTGTCTATCGAGAAAGC
AGAAAGGAAGTGGGAAGAGAAAAGGCAAAATCTGGACCACTATAACGGGAAAGAGTTTGA
GAAGCTCCTCGAAGAAGCCCAGGCCAATATAATGAAGTCAATTCCAAACCTGGAGATGCC
ACCAGCCTCGGGCCCTCACCCGAAGGGTGATGCCCCAGTGGACAAGCCTGAACTTTCAGA
AGACTCTCCAAATTCAGAACAGGACTTGGACAAGCTGGGGGGTAGGTCCCCTCCTCNTCC
CTCCTCCACCACCTCCTCCACCCCCTCCCCCGCCTCCCCCACTTCACTGAATCAAGGTGC
CAAGAGCATCAGGACCGTCCACACGCCCAGCCTCACCAGCTACAAGGCTCAGAACGGAAG
TTCAAGCAAAGCCACCCCATCCACAGCAAAGGAAACCTCTTAAAGGCCACAGCCTATTAG
GCGCAAGTCGGAGTTACGTTTAACGAAAAAAAAAAAAATTTTTTTAACCGTCTTCGACAG
CTGTTTTCCCAAGAGAATGTAACATATTGCTGTATGTTTGAAGCTTAATGCCAAGTCCTG
TGCTAACTCTCAGATTAATAGATTTCAGTAAAGCTTGTTCCTTTGTTTTTACTTTGTTGC
TGTTATAATTACATAGTGTTTACTGTGTCTATTCAATACCTATTAAATGAAGGAAGCATG
TGTTACCCAGAGAGCGTGTGGCAGGAGAGAAGAGTGTGTGTGAGACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCATTGACGAAATCCACAGCATGAGTGCCAAGAACAGGGCAGTGTCTATCGAGAAAGC
AGAAAGGAAGTGGGAAGAGAAAAGGCAAAATCTGGACCACTATAACGGGAAAGAGTTTGA
GAAGCTCCTCGAAGAAGCCCAGGCCAATATAATGAAGTCAATTCCAAACCTGGAGATGCC
ACCAGCCTCGGGCCCTCACCCGAAGGGTGATGCCCCAGTGGACAAGCCTGAACTTTCAGA
AGACTCTCCAAATTCAGAACAGGACTTGGACAAGCTGGGGGGTAGGTCCCCTCCTCNTCC
CTCCTCCACCACCTCCTCCACCCCCTCCCCCGCCTCCCCCACTTCACTGAATCAAGGTGC
CAAGAGCATCAGGACCGTCCACACGCCCAGCCTCACCAGCTACAAGGCTCAGAACGGAAG
TTCAAGCAAAGCCACCCCATCCACAGCAAAGGAAACCTCTTAAAGGCCACAGCCTATTAG
GCGCAAGTCGGAGTTACGTTTAACGAAAAAAAAAAAAATTTTTTTAACCGTCTTCGACAG
CTGTTTTCCCAAGAGAATGTAACATATTGCTGTATGTTTGAAGCTTAATGCCAAGTCCTG
TGCTAACTCTCAGATTAATAGATTTCAGTAAAGCTTGTTCCTTTGTTTTTACTTTGTTGC
TGTTATAATTACATAGTGTTTACTGTGTCTATTCAATACCTATTAAATGAAGGAAGCATG
TGTTACCCAGAGAGCGTGTGGCAGGAGAGAAGAGTGTGTGTGAGACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61884963|ref|XP_603967.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61884963|ref|XP_603967.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               45-239, gnl|bosTau2|chr13 (11834993-11834800)
               

               
               45-239, gnl|Hg17|chr10 (24856861-24857054)
               

               
               45-239, gnl|Mm7|chr2 (20853577-20853770)
               


               
               299-768, gnl|bosTau2|chr13 (11811328-11810862)
               

               
               299-768, gnl|Hg17|chr10 (24875099-24875550)
               

               
               299-768, gnl|Mm7|chr2 (20874216-20874662)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               45-239, gnl|bosTau2|chr13 (11834993-11834800)
               

               
               45-239, gnl|Hg17|chr10 (24856861-24857054)
               

               
               45-239, gnl|Mm7|chr2 (20853577-20853770)
               


               
               299-768, gnl|bosTau2|chr13 (11811328-11810862)
               

               
               299-768, gnl|Hg17|chr10 (24875099-24875550)
               

               
               299-768, gnl|Mm7|chr2 (20874216-20874662)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cmu (0.372787)
               

               
               cst (0.280073)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               csk (0.140746)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               cst (0.280073)
               

               
               sag (0.182715)
               

               
               cki (0.165235)
               

               
               csk (0.140746)

	45-239, gnl\|bosTau2\|chr13 (11834993-11834800)
	45-239, gnl\|Hg17\|chr10 (24856861-24857054)
	45-239, gnl\|Mm7\|chr2 (20853577-20853770)

	299-768, gnl\|bosTau2\|chr13 (11811328-11810862)
	299-768, gnl\|Hg17\|chr10 (24875099-24875550)
	299-768, gnl\|Mm7\|chr2 (20874216-20874662)

	cmu (0.372787)
	cst (0.280073)
	sag (0.182715)
	cki (0.165235)
	csk (0.140746)