Ss1.1-rcst03_n8.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAGCCCTCGGGAGGGTGGAGAGAATTCGAATGCTTCCGCGGTTGGCTACTCAGTGTCC TAGTCTCAAGTTGCCTAACGCTGCTGCTGGCGTTCCTAATATAGACACAGCGTTTCTTTT TAATACTTCCAAAGAAACAAAATAGCAGTCAAGCTGGCGGAAGCAATGGTTCACATCAAG AAAGGCGAGCTGACCCAGGAGGAAAAGGAGCTGCTGGAAGTTATCGGAAAAGGTACTGTC CAAGAAGCTGGAACACTGTTAGCTAGCAAGAATGTTCGTGTCAACTGTTTGGATGAGAAT GGAATGACTCCTCTAATGCATGCTGCCTATAAAGGGAAACTTGATATGTGCAAATTACTT TTACGCCATGGAGCTGATGTAAATTGTCATCAACATGAACATGGATACACAGCCCTCATG TTTGCTGCACTTTCTGGTAATAAAGACATCACATGGGTAATGTTGGAAGCTGGTGCCGAG ACAGATGTTGTCAATTCTGTAGGAAGAACAGCAGCTCAGATGGCAGCCTTTGTGGGTCAG CATGATTGTGTGACTATAATCAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAGCCCTCGGGAGGGTGGAGAGAATTCGAATGCTTCCGCGGTTGGCTACTCAGTGTCC TAGTCTCAAGTTGCCTAACGCTGCTGCTGGCGTTCCTAATATAGACACAGCGTTTCTTTT TAATACTTCCAAAGAAACAAAATAGCAGTCAAGCTGGCGGAAGCAATGGTTCACATCAAG AAAGGCGAGCTGACCCAGGAGGAAAAGGAGCTGCTGGAAGTTATCGGAAAAGGTACTGTC CAAGAAGCTGGAACACTGTTAGCTAGCAAGAATGTTCGTGTCAACTGTTTGGATGAGAAT GGAATGACTCCTCTAATGCATGCTGCCTATAAAGGGAAACTTGATATGTGCAAATTACTT TTACGCCATGGAGCTGATGTAAATTGTCATCAACATGAACATGGATACACAGCCCTCATG TTTGCTGCACTTTCTGGTAATAAAGACATCACATGGGTAATGTTGGAAGCTGGTGCCGAG ACAGATGTTGTCAATTCTGTAGGAAGAACAGCAGCTCAGATGGCAGCCTTTGTGGGTCAG CATGATTGTGTGACTATAATCAAC |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 120-234, + strand, RNAz p=0.736027 | |
| 296-438, - strand, RNAz p=0.922184 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 120-234, + strand, RNAz p=0.736027 | |
| 296-438, - strand, RNAz p=0.922184 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_020319, + |
| Aligned organism(s): 6 entry(ies) | More info |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
| 1-234, gnl|bosTau2|chr4 (8040868-8040636) | |
| 1-234, gnl|Hg17|chr7 (16458602-16458370) | |
| 1-234, gnl|Mm7|chr12 (33996807-33997040) | |
| 296-438, gnl|bosTau2|chr4 (8026064-8025922) | |
| 296-438, gnl|Hg17|chr7 (16440045-16439903) | |
| 296-438, gnl|Mm7|chr12 (34010062-34010204) |
| Aligned organism(s): 6 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-234, gnl|bosTau2|chr4 (8040868-8040636) | |
| 1-234, gnl|Hg17|chr7 (16458602-16458370) | |
| 1-234, gnl|Mm7|chr12 (33996807-33997040) | |
| 296-438, gnl|bosTau2|chr4 (8026064-8025922) | |
| 296-438, gnl|Hg17|chr7 (16440045-16439903) | |
| 296-438, gnl|Mm7|chr12 (34010062-34010204) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cst (0.280073) | |
| cut (0.169924) | |
| nco (0.161734) | |
| hlv (0.139256) | |
| ssp (0.13552) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.280073) | |
| cut (0.169924) | |
| nco (0.161734) | |
| hlv (0.139256) | |
| ssp (0.13552) |