Non-Coding RNA Search

Ss1.1-rcst04_h6.5

Sequence:


               
               AAGGGTTGGCTGGACTGAATAAGGGAGAATGGCTGGACTTTTTGGGGAAAAAAAAAAAAG
GGAAATTGATCAGTTCTAAAGAAATCATCCATCCAGTATCTTATTCTAAGAAGAGTCTGG
CATCCACATAAATAAAAATGCTGAGCTCCAGAAAAGATGGACATCAGAATGGCTTAATTC
TGTCAAACATAATTTTTAAGCGAGGACAGAAAAAACAGCCAACTTCTAGAGAAGGAGAAG
CGTTTCTCTCCGGATGCCGTTAGGAAAGGGCTGCAGAGGCATCGTGACCCGTGTTCCCCG
CTGCAAAAGGCATCCGGGGAGGAGGGGTGCTGCCCTTAGAAAAGCCGGTCTGCTCAGCAC
GTGCCTTCTGGCCAGCTGAGATCACATGCATTTACATGCTTTTCTGTGTTATCAGATTCC
AGGGTGTTTATCTGAACGACATTTGTGGTTTCCTCGACACTCCCCGAGGGCTGTTTCTAA
GGGGCCGGCCAGTGTATGGGAAATGAATGTAACCCGGACGCCGACGTCCCCACACGCAGC
AGGACCTCGCACACTCCAGGTGTTTGTGCAGTGTCCTCTGGGTTGCTTTCCGTGGTGGCT
GACGTCACTGGAACGTTTGGGAGCATGAGGGGGGGATTCCTAAGTGGGAAGCATTACACG
TTGCTAAATCATGTATTTATTCTTGATTAAGATAAACCTAATAAATATTTAATTCTTGGA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGTTGGCTGGACTGAATAAGGGAGAATGGCTGGACTTTTTGGGGAAAAAAAAAAAAG
GGAAATTGATCAGTTCTAAAGAAATCATCCATCCAGTATCTTATTCTAAGAAGAGTCTGG
CATCCACATAAATAAAAATGCTGAGCTCCAGAAAAGATGGACATCAGAATGGCTTAATTC
TGTCAAACATAATTTTTAAGCGAGGACAGAAAAAACAGCCAACTTCTAGAGAAGGAGAAG
CGTTTCTCTCCGGATGCCGTTAGGAAAGGGCTGCAGAGGCATCGTGACCCGTGTTCCCCG
CTGCAAAAGGCATCCGGGGAGGAGGGGTGCTGCCCTTAGAAAAGCCGGTCTGCTCAGCAC
GTGCCTTCTGGCCAGCTGAGATCACATGCATTTACATGCTTTTCTGTGTTATCAGATTCC
AGGGTGTTTATCTGAACGACATTTGTGGTTTCCTCGACACTCCCCGAGGGCTGTTTCTAA
GGGGCCGGCCAGTGTATGGGAAATGAATGTAACCCGGACGCCGACGTCCCCACACGCAGC
AGGACCTCGCACACTCCAGGTGTTTGTGCAGTGTCCTCTGGGTTGCTTTCCGTGGTGGCT
GACGTCACTGGAACGTTTGGGAGCATGAGGGGGGGATTCCTAAGTGGGAAGCATTACACG
TTGCTAAATCATGTATTTATTCTTGATTAAGATAAACCTAATAAATATTTAATTCTTGGA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               223-331, + strand, RNAz p=0.754176

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               223-331, + strand, RNAz p=0.754176

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_006748, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_006748, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-385, gnl|bosTau2|chr14 (4604113-4603733)
               

               
               1-385, gnl|Hg17|chr8 (134118903-134118516)
               

               
               1-385, gnl|Mm7|chr15 (66865296-66864898)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-385, gnl|bosTau2|chr14 (4604113-4603733)
               

               
               1-385, gnl|Hg17|chr8 (134118903-134118516)
               

               
               1-385, gnl|Mm7|chr15 (66865296-66864898)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               csp (0.322373)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               jej (0.197844)
               

               
               fcc (0.197785)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               thg (0.126791)
               

               
               cly (0.120642)
               

               
               eru (0.120048)

	1-385, gnl\|bosTau2\|chr14 (4604113-4603733)
	1-385, gnl\|Hg17\|chr8 (134118903-134118516)
	1-385, gnl\|Mm7\|chr15 (66865296-66864898)

	csp (0.322373)
	fce (0.271592)
	med (0.232504)
	jej (0.197844)
	fcc (0.197785)
	spl (0.143184)
	cst (0.140036)
	thg (0.126791)
	cly (0.120642)
	eru (0.120048)