Non-Coding RNA Search

Ss1.1-rcst07_f9.5

Sequence:


               
               GAGAAAAAGTTGGGACTAGGAACTGCATATATTCATGGGATGAAGCACGCCACAGGAAAC
TACATAATCATTATGGATGCGGATCTCTCACACCATGTGAGTGGTCTGTTTTCTTTATTA
GCTATCTATGGTAGTCCTAGCATGTTTTACTGACCTACTGTTTATTCTTTCTAAATTTCA
GCCAAAATTTATTCCTGAATTCATTAGGTAGGTATTTCTAATGTTTGAAAGAATTATGAT
TCAAATCATTTATCTCATTTTGATGTTGGACTTATTTCATCTTTCATTCCTCATTCATTA
AGAATGCTTGTGCTCGGGTTCCCACCATAGTGCAGTGAGTTAAGAGTCCAACTGTGGGTT
GTTGCGGGTTTGATCCCTGGCTTGGTGCAGTGGGTTAAAGGATCTGGCATTGGCTCAGTT
GGCTCACCTGCATCTCAGTGGAAGCTATAGCTCAGATTCATTCCTTGGCCCAGGAACTTC
CATATGCCGTGGGTATGGCCATGA------------AAAAAAAGTTTGTGCTGTTTTAAG
TTGCTATCAAAAATAAAACCAACATATAGATCTAAGACCTATGACTATAGATAAGTGACT
AAATGATGCATTTCAGGAGCCCTGATGGGGACTAATCAACAGATAACTCCTTTGTGTTAC
CTAATTCTTCCAGACTAAGAGAAGGATGAAAGGCAGCATCCTAGTTAAATGGAATTAAGC
CCTCCATCGTATGGGTAAAATATCATGAACAAATGGGGTTTATTCCAGGAATGCCAGAAT
GGTTTTCAAGAATCCATCACAAGGATTAATTTATCACATTAACAAAGCAACATGATTAAG
TCTATAGATGCTAAACGATATTTGGTAAAAGTCACTAGCCATTTCTAA------------
------------------------------------------------------------
------------------------------------------------------------
AATTCACCTCCTCCTCCCTCAATCCTCCTTCAGCAATGTGGGATCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGAAAAAGTTGGGACTAGGAACTGCATATATTCATGGGATGAAGCACGCCACAGGAAAC
TACATAATCATTATGGATGCGGATCTCTCACACCATGTGAGTGGTCTGTTTTCTTTATTA
GCTATCTATGGTAGTCCTAGCATGTTTTACTGACCTACTGTTTATTCTTTCTAAATTTCA
GCCAAAATTTATTCCTGAATTCATTAGGTAGGTATTTCTAATGTTTGAAAGAATTATGAT
TCAAATCATTTATCTCATTTTGATGTTGGACTTATTTCATCTTTCATTCCTCATTCATTA
AGAATGCTTGTGCTCGGGTTCCCACCATAGTGCAGTGAGTTAAGAGTCCAACTGTGGGTT
GTTGCGGGTTTGATCCCTGGCTTGGTGCAGTGGGTTAAAGGATCTGGCATTGGCTCAGTT
GGCTCACCTGCATCTCAGTGGAAGCTATAGCTCAGATTCATTCCTTGGCCCAGGAACTTC
CATATGCCGTGGGTATGGCCATGA------------AAAAAAAGTTTGTGCTGTTTTAAG
TTGCTATCAAAAATAAAACCAACATATAGATCTAAGACCTATGACTATAGATAAGTGACT
AAATGATGCATTTCAGGAGCCCTGATGGGGACTAATCAACAGATAACTCCTTTGTGTTAC
CTAATTCTTCCAGACTAAGAGAAGGATGAAAGGCAGCATCCTAGTTAAATGGAATTAAGC
CCTCCATCGTATGGGTAAAATATCATGAACAAATGGGGTTTATTCCAGGAATGCCAGAAT
GGTTTTCAAGAATCCATCACAAGGATTAATTTATCACATTAACAAAGCAACATGATTAAG
TCTATAGATGCTAAACGATATTTGGTAAAAGTCACTAGCCATTTCTAA------------
------------------------------------------------------------
------------------------------------------------------------
AATTCACCTCCTCCTCCCTCAATCCTCCTTCAGCAATGTGGGATCCTC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               17-288, gnl|bosTau2|chr13 (59102272-59102538)
               

               
               17-288, gnl|Hg17|chr20 (48995870-48995594)
               

               
               17-288, gnl|Mm7|chr2 (168012770-168011816)
               


               
               666-874, gnl|bosTau2|chr13 (59102740-59102950)
               

               
               666-874, gnl|Hg17|chr20 (48995141-48994938)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-288, gnl|bosTau2|chr13 (59102272-59102538)
               

               
               17-288, gnl|Hg17|chr20 (48995870-48995594)
               

               
               17-288, gnl|Mm7|chr2 (168012770-168011816)
               


               
               666-874, gnl|bosTau2|chr13 (59102740-59102950)
               

               
               666-874, gnl|Hg17|chr20 (48995141-48994938)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               csk (0.140746)
               

               
               cst (0.140036)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               cst (0.140036)

	17-288, gnl\|bosTau2\|chr13 (59102272-59102538)
	17-288, gnl\|Hg17\|chr20 (48995870-48995594)
	17-288, gnl\|Mm7\|chr2 (168012770-168011816)

	666-874, gnl\|bosTau2\|chr13 (59102740-59102950)
	666-874, gnl\|Hg17\|chr20 (48995141-48994938)