Ss1.1-rcst07_o14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCACTTCAGCATCATTCCAACCTGGAAGAGAATTTCACCTCCACCGAGGAATCTTCGG AAGAACACTTAGACTTGCTGGGGCACACAGAGGTGCAGTACCGCCTGATGCTGCACATCC AGATGCAGCTGTGCGAGCTCTCGCTGTGGGACTGGATCGCGGACAGGAACCAGCGGGGCC GGGAGAGCGTGGACGAGTCCGCCTGTCCTTATGTTATGGCCAGTGTTGCAACAAAAATTT TTCAAGAATTGGTGGAAGGTGTGTTTTACATACACAACATGGGAATTGTACATAGAGATC TAAAGCCCAGAAATATTTTTCTTCATGGCCCCGATCAGCAAGTGAAAATTGGAGACTTTG GCCTGGCCTGCACAGACATCATACAAAAGAACACAGACTGGGCCAACGGAAATGGGAAGA GAACGCCAACACACACCTCCAGAGTGGGCACTTGTCTGTATGCGTCACCTGAGCAGTTGG AAGGCTCCGAGTATGATGCCAAGTCAGACATGTACAGCCTGGGGGTCATCCTGCTGGAGC TCTTCCAGCCGTTGGGAACAGAGATGGAGCGAGCGCAGGTTCTCACAGGTTTGAGAAGCG GCCGGATACCCGAGTCCCTCGGGAAAAGGTGCCCCGTCCAAGCCAAGTACATCCAGCACC TGACCAGGAGAAACGCGTCCCAGAGGCCGTCTGCGCTTCAGCTGCTGCAGAGCGAACTTT TCCAAAATTCTGGAAACGTTAATCTCACCCTGCAGATGAAGATACTAGAGCAAGAGAAAG AAATCGAAGACCTGAAGCAGCAGCTGCGCCTCCTCTCTCAGGACAGAGGGGTGGAGGAGG ACGTCAGAGACGAGCGGGAGCCCGTCTAGCCCAGCGGGCTCTGTACATACGAATGTGGAC TTATTACTCTTTAAGCTAAGTACTTAACTGGAATGGACATTTTCAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCACTTCAGCATCATTCCAACCTGGAAGAGAATTTCACCTCCACCGAGGAATCTTCGG AAGAACACTTAGACTTGCTGGGGCACACAGAGGTGCAGTACCGCCTGATGCTGCACATCC AGATGCAGCTGTGCGAGCTCTCGCTGTGGGACTGGATCGCGGACAGGAACCAGCGGGGCC GGGAGAGCGTGGACGAGTCCGCCTGTCCTTATGTTATGGCCAGTGTTGCAACAAAAATTT TTCAAGAATTGGTGGAAGGTGTGTTTTACATACACAACATGGGAATTGTACATAGAGATC TAAAGCCCAGAAATATTTTTCTTCATGGCCCCGATCAGCAAGTGAAAATTGGAGACTTTG GCCTGGCCTGCACAGACATCATACAAAAGAACACAGACTGGGCCAACGGAAATGGGAAGA GAACGCCAACACACACCTCCAGAGTGGGCACTTGTCTGTATGCGTCACCTGAGCAGTTGG AAGGCTCCGAGTATGATGCCAAGTCAGACATGTACAGCCTGGGGGTCATCCTGCTGGAGC TCTTCCAGCCGTTGGGAACAGAGATGGAGCGAGCGCAGGTTCTCACAGGTTTGAGAAGCG GCCGGATACCCGAGTCCCTCGGGAAAAGGTGCCCCGTCCAAGCCAAGTACATCCAGCACC TGACCAGGAGAAACGCGTCCCAGAGGCCGTCTGCGCTTCAGCTGCTGCAGAGCGAACTTT TCCAAAATTCTGGAAACGTTAATCTCACCCTGCAGATGAAGATACTAGAGCAAGAGAAAG AAATCGAAGACCTGAAGCAGCAGCTGCGCCTCCTCTCTCAGGACAGAGGGGTGGAGGAGG ACGTCAGAGACGAGCGGGAGCCCGTCTAGCCCAGCGGGCTCTGTACATACGAATGTGGAC TTATTACTCTTTAAGCTAAGTACTTAACTGGAATGGACATTTTCAGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 91-206, gnl|bosTau2|chr25 (35771689-35771804) | |
| 91-206, gnl|canFam2|chr6 (14471819-14471725) | |
| 91-206, gnl|dasNov1|scaffold_87768 (4064-3972) | |
| 91-206, gnl|echTel1|scaffold_184076 (11624-11718) | |
| 91-206, gnl|fr1|chrUn (189892784-189892688) | |
| 91-206, gnl|hg17|chr3 (143652735-143652832) | |
| 91-206, gnl|Hg17|chr7 (5851545-5851430) | |
| 91-206, gnl|loxAfr1|scaffold_18677 (40758-40852) | |
| 91-206, gnl|mm7|chr5 (142915775-142915872) | |
| 91-206, gnl|Mm7|chr5 (142915777-142915892) | |
| 91-206, gnl|monDom2|scaffold_19 (43658221-43658312) | |
| 91-206, gnl|oryCun1|scaffold_172967 (22861-22944) | |
| 91-206, gnl|panTro1|chr2 (146229619-146229716) | |
| 91-206, gnl|rheMac2|chr2 (145415800-145415704) | |
| 91-206, gnl|rn3|chr12 (11085865-11085768) | |
| 91-206, gnl|tetNig1|chr2 (3947240-3947334) | |
| 301-421, gnl|bosTau2|chr25 (35779728-35779848) | |
| 301-421, gnl|canFam2|chr6 (14462272-14462184) | |
| 301-421, gnl|canFam2|chr6 (14462155-14462272) | |
| 301-421, gnl|danRer3|chr16 (13573676-13573585) | |
| 301-421, gnl|dasNov1|scaffold_13809 (7232-7115) | |
| 301-421, gnl|dasNov1|scaffold_87768 (3859-3785) | |
| 301-421, gnl|echTel1|scaffold_291982 (148637-148564) | |
| 301-421, gnl|fr1|chrUn (189890125-189890028) | |
| 301-421, gnl|fr1|chrUn (189890026-189890125) | |
| 301-421, gnl|galGal2|chr14 (3179090-3178993) | |
| 301-421, gnl|hg17|chr3 (143652946-143653034) | |
| 301-421, gnl|hg17|chr7 (5841787-5841907) | |
| 301-421, gnl|Hg17|chr7 (5841909-5841789) | |
| 301-421, gnl|loxAfr1|scaffold_26159 (14425-14347) | |
| 301-421, gnl|mm7|chr5 (142926221-142926306) | |
| 301-421, gnl|mm7|chr5 (142926335-142926221) | |
| 301-421, gnl|Mm7|chr5 (142926217-142926334) | |
| 301-421, gnl|monDom2|scaffold_19 (43673284-43673372) | |
| 301-421, gnl|monDom2|scaffold_19 (43672662-43672545) | |
| 301-421, gnl|oryCun1|scaffold_172967 (23032-23109) | |
| 301-421, gnl|oryCun1|scaffold_172967 (23136-23034) | |
| 301-421, gnl|panTro1|chr2 (146229830-146229918) | |
| 301-421, gnl|panTro1|chr6 (6960682-6960565) | |
| 301-421, gnl|rheMac2|chr2 (145415590-145415502) | |
| 301-421, gnl|rheMac2|chr3 (44208492-44208609) | |
| 301-421, gnl|rn3|chr12 (11074465-11074377) | |
| 301-421, gnl|rn3|chr12 (11074348-11074465) | |
| 301-421, gnl|tetNig1|chr2 (3950172-3950269) | |
| 301-421, gnl|tetNig1|chr2 (3950292-3950172) | |
| 301-421, gnl|xenTro1|scaffold_6 (2432443-2432317) | |
| 502-739, gnl|bosTau2|chr25 (35780626-35780863) | |
| 502-739, gnl|Hg17|chr7 (5839835-5839598) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 91-206, gnl|bosTau2|chr25 (35771689-35771804) | |
| 91-206, gnl|canFam2|chr6 (14471819-14471725) | |
| 91-206, gnl|dasNov1|scaffold_87768 (4064-3972) | |
| 91-206, gnl|echTel1|scaffold_184076 (11624-11718) | |
| 91-206, gnl|fr1|chrUn (189892784-189892688) | |
| 91-206, gnl|hg17|chr3 (143652735-143652832) | |
| 91-206, gnl|Hg17|chr7 (5851545-5851430) | |
| 91-206, gnl|loxAfr1|scaffold_18677 (40758-40852) | |
| 91-206, gnl|mm7|chr5 (142915775-142915872) | |
| 91-206, gnl|Mm7|chr5 (142915777-142915892) | |
| 91-206, gnl|monDom2|scaffold_19 (43658221-43658312) | |
| 91-206, gnl|oryCun1|scaffold_172967 (22861-22944) | |
| 91-206, gnl|panTro1|chr2 (146229619-146229716) | |
| 91-206, gnl|rheMac2|chr2 (145415800-145415704) | |
| 91-206, gnl|rn3|chr12 (11085865-11085768) | |
| 91-206, gnl|tetNig1|chr2 (3947240-3947334) | |
| 301-421, gnl|bosTau2|chr25 (35779728-35779848) | |
| 301-421, gnl|canFam2|chr6 (14462272-14462184) | |
| 301-421, gnl|canFam2|chr6 (14462155-14462272) | |
| 301-421, gnl|danRer3|chr16 (13573676-13573585) | |
| 301-421, gnl|dasNov1|scaffold_13809 (7232-7115) | |
| 301-421, gnl|dasNov1|scaffold_87768 (3859-3785) | |
| 301-421, gnl|echTel1|scaffold_291982 (148637-148564) | |
| 301-421, gnl|fr1|chrUn (189890125-189890028) | |
| 301-421, gnl|fr1|chrUn (189890026-189890125) | |
| 301-421, gnl|galGal2|chr14 (3179090-3178993) | |
| 301-421, gnl|hg17|chr3 (143652946-143653034) | |
| 301-421, gnl|hg17|chr7 (5841787-5841907) | |
| 301-421, gnl|Hg17|chr7 (5841909-5841789) | |
| 301-421, gnl|loxAfr1|scaffold_26159 (14425-14347) | |
| 301-421, gnl|mm7|chr5 (142926221-142926306) | |
| 301-421, gnl|mm7|chr5 (142926335-142926221) | |
| 301-421, gnl|Mm7|chr5 (142926217-142926334) | |
| 301-421, gnl|monDom2|scaffold_19 (43673284-43673372) | |
| 301-421, gnl|monDom2|scaffold_19 (43672662-43672545) | |
| 301-421, gnl|oryCun1|scaffold_172967 (23032-23109) | |
| 301-421, gnl|oryCun1|scaffold_172967 (23136-23034) | |
| 301-421, gnl|panTro1|chr2 (146229830-146229918) | |
| 301-421, gnl|panTro1|chr6 (6960682-6960565) | |
| 301-421, gnl|rheMac2|chr2 (145415590-145415502) | |
| 301-421, gnl|rheMac2|chr3 (44208492-44208609) | |
| 301-421, gnl|rn3|chr12 (11074465-11074377) | |
| 301-421, gnl|rn3|chr12 (11074348-11074465) | |
| 301-421, gnl|tetNig1|chr2 (3950172-3950269) | |
| 301-421, gnl|tetNig1|chr2 (3950292-3950172) | |
| 301-421, gnl|xenTro1|scaffold_6 (2432443-2432317) | |
| 502-739, gnl|bosTau2|chr25 (35780626-35780863) | |
| 502-739, gnl|Hg17|chr7 (5839835-5839598) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cst (0.280073) | |
| mas (0.210305) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| cov (0.132153) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.280073) | |
| mas (0.210305) | |
| csp (0.161186) | |
| eli (0.151814) | |
| cag (0.151194) | |
| cov (0.132153) | |
| jca (0.11396) | |
| cty (0.10408) |