Non-Coding RNA Search

Ss1.1-rcst07_o19.5

Sequence:


               
               TCGAGGAGAAAGGTACTGTCATTACTCCCATTTACAAATGTGGAAACTGAGACACTGAAA
TTAATTAATTTGTCCAAGGTCACATATGGAAGCTGATGGAACCAGGACCTCACCTACTAA
ACTACACTGCTTCCTGGGGGAGAGGGGAGGTTCCGGATAATGATGTGACCTTTGGAGGAC
TTGCAACACCTTTCTCAGCCCACCGAAGATGTTCTTCCAACCCCACCCAATGGCTTAAAG
TGTCTGATAAGTCTTCTGACCTGTGACCTTGCTGGGGCAAAGGGCTTCAGTCAGCTTTCA
AGCAGATTTCGCCTTTCTTGGGCACCTCTTCGGGGCCTTGCTCCGGGCTAAGCGCTGTGG
AGTCCCCTGTGTATATGTGAATGAAGACACAGCCTTATTTATCTTTGTTTGTTAAATGTT
TAATTGCCTCCTCTAAAGAATGAGGCTGCTTCTAGTCTCAAGGAGTGTGTGGCTTTCGCC
AGAGAGGAAGGCTTAGACACCGATTATACACTAAGATGGACACTGAGAGAGGGGACAGAG
AGGGGGGCAGGCTGAACCCACAAGAGCCCTGTGGGAGCCCCGTGTGGAAGTCTGGTTGGA
AGATGGGGAGCCAGCTGGAGGCCGGAGCCAAACTGTTCAGTAGGTAAGGACAGGGTAGTG
AGGAAAAGGCATAGGGAGGACCCAAAAGTAAGTCCCTACAGGAGCTCACTTGAGGACACT
AACTGCCACTGTGGTGTCAAGGCAGGGAGAGGAGCCGAAAGAGGCCTGGGGGTCCATCCC
AGGGGGAGCGGATAGGAAGAAGGTGAGGACCCACTGCAGGGTCCACTCAGACGACAGATG
CAGTGTGAGGCATATGCAGAAACACGATGCTGCAGACGGTGAACGCACATTTGGCAAGTG
CACGCACACCAGCAATGAGAAGCATGTCAAACACAATGGAAAGTTGCCTATGGTGGGGAG
CAATGGAATAGGACATAGCGTCAAAAGGGAATGAATGAGTAAATAAAATCAAAGGTCTTG
CACAGACAAATGTCTGTCCTGAACTGAAAAATAAGATTAACTTGTCCCTCTGCACCCAAG
GCCTGGAAAGTGGAGGTAGGAAAAAAGTACAAGAGAAAGAGTAAGAAAGCCCAGGTCCAG
GAGTACCCATCGTGGTGCAGTGGAAACGAATCTGACTAGGAACTATGAGGTTGCGGGTTT
GGTCCCTGCCCTTGCTCAGTGAGTTAAGGATCCGGCGTTGCCATGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGAGGAGAAAGGTACTGTCATTACTCCCATTTACAAATGTGGAAACTGAGACACTGAAA
TTAATTAATTTGTCCAAGGTCACATATGGAAGCTGATGGAACCAGGACCTCACCTACTAA
ACTACACTGCTTCCTGGGGGAGAGGGGAGGTTCCGGATAATGATGTGACCTTTGGAGGAC
TTGCAACACCTTTCTCAGCCCACCGAAGATGTTCTTCCAACCCCACCCAATGGCTTAAAG
TGTCTGATAAGTCTTCTGACCTGTGACCTTGCTGGGGCAAAGGGCTTCAGTCAGCTTTCA
AGCAGATTTCGCCTTTCTTGGGCACCTCTTCGGGGCCTTGCTCCGGGCTAAGCGCTGTGG
AGTCCCCTGTGTATATGTGAATGAAGACACAGCCTTATTTATCTTTGTTTGTTAAATGTT
TAATTGCCTCCTCTAAAGAATGAGGCTGCTTCTAGTCTCAAGGAGTGTGTGGCTTTCGCC
AGAGAGGAAGGCTTAGACACCGATTATACACTAAGATGGACACTGAGAGAGGGGACAGAG
AGGGGGGCAGGCTGAACCCACAAGAGCCCTGTGGGAGCCCCGTGTGGAAGTCTGGTTGGA
AGATGGGGAGCCAGCTGGAGGCCGGAGCCAAACTGTTCAGTAGGTAAGGACAGGGTAGTG
AGGAAAAGGCATAGGGAGGACCCAAAAGTAAGTCCCTACAGGAGCTCACTTGAGGACACT
AACTGCCACTGTGGTGTCAAGGCAGGGAGAGGAGCCGAAAGAGGCCTGGGGGTCCATCCC
AGGGGGAGCGGATAGGAAGAAGGTGAGGACCCACTGCAGGGTCCACTCAGACGACAGATG
CAGTGTGAGGCATATGCAGAAACACGATGCTGCAGACGGTGAACGCACATTTGGCAAGTG
CACGCACACCAGCAATGAGAAGCATGTCAAACACAATGGAAAGTTGCCTATGGTGGGGAG
CAATGGAATAGGACATAGCGTCAAAAGGGAATGAATGAGTAAATAAAATCAAAGGTCTTG
CACAGACAAATGTCTGTCCTGAACTGAAAAATAAGATTAACTTGTCCCTCTGCACCCAAG
GCCTGGAAAGTGGAGGTAGGAAAAAAGTACAAGAGAAAGAGTAAGAAAGCCCAGGTCCAG
GAGTACCCATCGTGGTGCAGTGGAAACGAATCTGACTAGGAACTATGAGGTTGCGGGTTT
GGTCCCTGCCCTTGCTCAGTGAGTTAAGGATCCGGCGTTGCCATGAGC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               75-181, - strand, RNAz p=0.616324
               

               
               737-853, + strand, RNAz p=0.526919
               

               
               1003-1113, - strand, RNAz p=0.918311

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-181, - strand, RNAz p=0.616324
               

               
               737-853, + strand, RNAz p=0.526919
               

               
               1003-1113, - strand, RNAz p=0.918311

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               75-270, gnl|bosTau2|chr19 (19735450-19735257)
               

               
               75-270, gnl|canFam2|chr5 (33617314-33617173)
               

               
               75-270, gnl|dasNov1|scaffold_244057 (829-965)
               

               
               75-270, gnl|hg17|chr17 (6620917-6621060)
               

               
               75-270, gnl|Hg17|chr17 (6620916-6621101)
               

               
               75-270, gnl|loxAfr1|scaffold_20241 (14727-14866)
               

               
               75-270, gnl|panTro1|chr19_random (45167829-45167686)
               

               
               75-270, gnl|rheMac2|chr16 (6486717-6486859)
               


               
               591-997, gnl|bosTau2|chr19 (19734295-19733912)
               

               
               591-997, gnl|Hg17|chr17 (6621936-6622352)
               


               
               1003-1140, gnl|bosTau2|chr19 (19733738-19733599)
               

               
               1003-1140, gnl|Hg17|chr17 (6622359-6622505)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               75-270, gnl|bosTau2|chr19 (19735450-19735257)
               

               
               75-270, gnl|canFam2|chr5 (33617314-33617173)
               

               
               75-270, gnl|dasNov1|scaffold_244057 (829-965)
               

               
               75-270, gnl|hg17|chr17 (6620917-6621060)
               

               
               75-270, gnl|Hg17|chr17 (6620916-6621101)
               

               
               75-270, gnl|loxAfr1|scaffold_20241 (14727-14866)
               

               
               75-270, gnl|panTro1|chr19_random (45167829-45167686)
               

               
               75-270, gnl|rheMac2|chr16 (6486717-6486859)
               


               
               591-997, gnl|bosTau2|chr19 (19734295-19733912)
               

               
               591-997, gnl|Hg17|chr17 (6621936-6622352)
               


               
               1003-1140, gnl|bosTau2|chr19 (19733738-19733599)
               

               
               1003-1140, gnl|Hg17|chr17 (6622359-6622505)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cut (0.169924)
               

               
               cst (0.140036)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               cst (0.140036)

	75-181, - strand, RNAz p=0.616324
	737-853, + strand, RNAz p=0.526919
	1003-1113, - strand, RNAz p=0.918311

	75-270, gnl\|bosTau2\|chr19 (19735450-19735257)
	75-270, gnl\|canFam2\|chr5 (33617314-33617173)
	75-270, gnl\|dasNov1\|scaffold_244057 (829-965)
	75-270, gnl\|hg17\|chr17 (6620917-6621060)
	75-270, gnl\|Hg17\|chr17 (6620916-6621101)
	75-270, gnl\|loxAfr1\|scaffold_20241 (14727-14866)
	75-270, gnl\|panTro1\|chr19_random (45167829-45167686)
	75-270, gnl\|rheMac2\|chr16 (6486717-6486859)

	591-997, gnl\|bosTau2\|chr19 (19734295-19733912)
	591-997, gnl\|Hg17\|chr17 (6621936-6622352)

	1003-1140, gnl\|bosTau2\|chr19 (19733738-19733599)
	1003-1140, gnl\|Hg17\|chr17 (6622359-6622505)