Non-Coding RNA Search

Ss1.1-rcst08_f12.5

Sequence:


               
               AGGCCACTTTGCTGTATACCTGAAACTAACACAACATGGTAAATCAACTATACTTCCATA
AAAACTTTAAAAATACAGTACCTGTGAAATATACATCAGGATCTCCATTTCTGAAGCAAT
TGTAACAACTCTTTAGCCCAGAGGATGGGTACAGTTTAAGAAGATAAATTTGCAAAAGCT
TTTCAAGAGTCATTTTACTTTAAGATACCCAGAAAACAAATGACTGAAAGAAACCAAAGC
ATCGGCTACTCCATTGTAAAATTTAGGATATATCTCTACTTATACAACTTGTTCTGAAAT
AAAGCTATTAGTCTCCCCAGGTGGCGAATAAAGATATAAACACCGAGCTAGCAAAATCTT
CCTCTTGGATTGTATAGATTGCCTTGTTTCCAAGAATAATGGTTTAGTGAAGGTGCCAGC
TGTCGTACTTAACAGCCATCACTCATGCAACAATTGAAATGATGTGCTGTGTACTCGTTC
ACGCTTAGGGCAGGATGCTTATCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCCACTTTGCTGTATACCTGAAACTAACACAACATGGTAAATCAACTATACTTCCATA
AAAACTTTAAAAATACAGTACCTGTGAAATATACATCAGGATCTCCATTTCTGAAGCAAT
TGTAACAACTCTTTAGCCCAGAGGATGGGTACAGTTTAAGAAGATAAATTTGCAAAAGCT
TTTCAAGAGTCATTTTACTTTAAGATACCCAGAAAACAAATGACTGAAAGAAACCAAAGC
ATCGGCTACTCCATTGTAAAATTTAGGATATATCTCTACTTATACAACTTGTTCTGAAAT
AAAGCTATTAGTCTCCCCAGGTGGCGAATAAAGATATAAACACCGAGCTAGCAAAATCTT
CCTCTTGGATTGTATAGATTGCCTTGTTTCCAAGAATAATGGTTTAGTGAAGGTGCCAGC
TGTCGTACTTAACAGCCATCACTCATGCAACAATTGAAATGATGTGCTGTGTACTCGTTC
ACGCTTAGGGCAGGATGCTTATCG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               375-494, - strand, RNAz p=0.839863

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               375-494, - strand, RNAz p=0.839863

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               65-503, gnl|bosTau2|chr5 (52288251-52287813)
               

               
               65-503, gnl|Hg17|chr12 (25842256-25841782)
               

               
               65-503, gnl|Mm7|chr6 (145719179-145718769)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-503, gnl|bosTau2|chr5 (52288251-52287813)
               

               
               65-503, gnl|Hg17|chr12 (25842256-25841782)
               

               
               65-503, gnl|Mm7|chr6 (145719179-145718769)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.280073)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)

	65-503, gnl\|bosTau2\|chr5 (52288251-52287813)
	65-503, gnl\|Hg17\|chr12 (25842256-25841782)
	65-503, gnl\|Mm7\|chr6 (145719179-145718769)