Non-Coding RNA Search

Ss1.1-rcst10_e14.5

Sequence:


               
               GGAGCCTACACC------------------------------------------------
------------------------------------------------------------
------------------------------------AGTCATTTTAAAAGGTGCTATATT
CTACTTACATATATTAATGTAATAGAATTAAAGTCCATTTAAATAATTACTGCATATTTG
GTAGTCTACCAGGTATAATGGAAGATTAGTTTGAGTGTTTTTAAAACGTATAATTATTGG
TAATTCAGGTAAGAAGAATTTTTCTGTGTGTATTTTCCTTAACTGAGATATTACTGTGTT
TGCACTTGACGGTTTCCACGTTTTTTAGGCAGGGTCTCTAAGGCTAGATGTTTACTGTAG
TAATACATTCCAATGGTTAATTTAAAATTGTCCAGTAAAATCTTTGTTACTTTTCTGTTT
GTTAATGCTCTTCTTTTTATTTTTCTTTCAGCAAATAGTAGTGATAGTGAAGAACTTTCT
GCTGGTGAAAGTATAACTAAGACTCAGCCTGTCAAATCAGTTTCCACTGGAATAAAGGCT
CATGGTACCAAATCTCCTGCAAGGACTCAGTCTCCAGGAAAATGTGGAAAGAATGGCGAT
AAGGATCCTGACCTCAAGGAGCCCAGTAATCGGTTACCCAAAGTTTACAAATGGAGTTTT
CAGATGTGTAAGTGACATACATTAAATGGATAGTTATGCAGTAGAACCTTCATTCTGGTA
ATTCTTGATGCTAATAATTCTGGGAAAATGGCTACAAATGAAATGTAGAAATGTGATAAC
CATTGCAATATAGAAACCTTATTTGGGTCTTGGTTTTGAATAAAAAATTACTAAAAGATA
AATTTTAAGGAATAATTTTAAGGAGGCATTTGAGGAACATAACATTGACTAGGTATTTAT
GATATTAGCAATTTGCTCTAAAAAAAATCTCGTGTTGGGGGTGGGGAGTGGATAGGGGTA
TAAATGAGACAAAATTTGACATGAATTGCTAATTACTGAAGCTGGATGATGGGTATACAT
GGCTCCATTTACTACTCTCTGTACTTTTCTACACATGAGTAATATCCATAAAACATTTTT
TTTGAAAAAGAGACAACCCCTGAGTTTCTCATGCAAAGAAATATTCTTAGGAGATTGCAA
ATTGCTTTAGAGCATTTGAAAATTTTCCTCTAATTTAAAAGTTATAAAAGTTACACATGC
TTATTAAAAAAATCTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCTACACC------------------------------------------------
------------------------------------------------------------
------------------------------------AGTCATTTTAAAAGGTGCTATATT
CTACTTACATATATTAATGTAATAGAATTAAAGTCCATTTAAATAATTACTGCATATTTG
GTAGTCTACCAGGTATAATGGAAGATTAGTTTGAGTGTTTTTAAAACGTATAATTATTGG
TAATTCAGGTAAGAAGAATTTTTCTGTGTGTATTTTCCTTAACTGAGATATTACTGTGTT
TGCACTTGACGGTTTCCACGTTTTTTAGGCAGGGTCTCTAAGGCTAGATGTTTACTGTAG
TAATACATTCCAATGGTTAATTTAAAATTGTCCAGTAAAATCTTTGTTACTTTTCTGTTT
GTTAATGCTCTTCTTTTTATTTTTCTTTCAGCAAATAGTAGTGATAGTGAAGAACTTTCT
GCTGGTGAAAGTATAACTAAGACTCAGCCTGTCAAATCAGTTTCCACTGGAATAAAGGCT
CATGGTACCAAATCTCCTGCAAGGACTCAGTCTCCAGGAAAATGTGGAAAGAATGGCGAT
AAGGATCCTGACCTCAAGGAGCCCAGTAATCGGTTACCCAAAGTTTACAAATGGAGTTTT
CAGATGTGTAAGTGACATACATTAAATGGATAGTTATGCAGTAGAACCTTCATTCTGGTA
ATTCTTGATGCTAATAATTCTGGGAAAATGGCTACAAATGAAATGTAGAAATGTGATAAC
CATTGCAATATAGAAACCTTATTTGGGTCTTGGTTTTGAATAAAAAATTACTAAAAGATA
AATTTTAAGGAATAATTTTAAGGAGGCATTTGAGGAACATAACATTGACTAGGTATTTAT
GATATTAGCAATTTGCTCTAAAAAAAATCTCGTGTTGGGGGTGGGGAGTGGATAGGGGTA
TAAATGAGACAAAATTTGACATGAATTGCTAATTACTGAAGCTGGATGATGGGTATACAT
GGCTCCATTTACTACTCTCTGTACTTTTCTACACATGAGTAATATCCATAAAACATTTTT
TTTGAAAAAGAGACAACCCCTGAGTTTCTCATGCAAAGAAATATTCTTAGGAGATTGCAA
ATTGCTTTAGAGCATTTGAAAATTTTCCTCTAATTTAAAAGTTATAAAAGTTACACATGC
TTATTAAAAAAATCTAAAAAAAAA

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               15-642, gnl|bosTau2|chr28 (2291039-2291670)
               

               
               15-642, gnl|Hg17|chr1 (231665088-231664488)
               


               
               780-1137, gnl|bosTau2|chr28 (2291899-2292263)
               

               
               780-1137, gnl|Hg17|chr1 (231663399-231662823)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-642, gnl|bosTau2|chr28 (2291039-2291670)
               

               
               15-642, gnl|Hg17|chr1 (231665088-231664488)
               


               
               780-1137, gnl|bosTau2|chr28 (2291899-2292263)
               

               
               780-1137, gnl|Hg17|chr1 (231663399-231662823)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               eje (0.0988338)

	15-642, gnl\|bosTau2\|chr28 (2291039-2291670)
	15-642, gnl\|Hg17\|chr1 (231665088-231664488)

	780-1137, gnl\|bosTau2\|chr28 (2291899-2292263)
	780-1137, gnl\|Hg17\|chr1 (231663399-231662823)