Non-Coding RNA Search

Ss1.1-rcst11_c8.5

Sequence:


               
               ATCGTCATATGACCGGCCGGCGGCCCCGGCGCCGAGCAGACTCCCGCCGCCGCGATGGCC
CCGCCGCCGCCCCCGGCCGCGCGCTGAGCCGGCCGCGCGCCGCGGGAGCCGCAGCCGCGG
CGTCATGGCCCCGACCCTGCTCCAGAGGCTCTTCAACAAGAAGGGCGGAGGCAGCTCCGC
GGCAGCGGCGGCCCCTGGCCGTGCGCCTCGAGAGGGACCTGCCTTCAGTTGGTCGTGCTC
GGAGTTGGACCTGAATGAGATTCGCCTGATAGTTTACCAGGACTGTGAAAGGAGAGGCAG
ACAAGTCTTGTTTGATTCTAAAGCTGTGCACGAGATTGAGGAGGTGGCAACTCAGAAAAC
AGAGGACGTTGCTGGGAAAGCTTCGGCCAAGTGCTGCCACAGCGGCGGTGGCAGCCTCTC
TTCCCACGGTGCTCCTGGGAGCTCCTTCCAGCACACCAAGGAGCAGCTCCCCAAGTACCA
GTACACACGGCCAGCCTCCGACGTCAACATGCTGGGTGAGATGATGTTCGGCTCTGTCGC
CATGAGCTACAAGGGCTCCACCCTGAAGATACACTATATCCGGTGAGTTGGGGCAGCTTC
TGCAGCCATGCGACACAGACTGGGGTGCCCACCCTCTCATCAAACTCTTGTCTCTCCCTC
TTTGCCCTTCTGTTTGTCTCCAGCTCTCCTCCACAACTGATGATTAGTGGCTGTTTCTGG
ATGGGGTCATTATTTGGGGGCCAGGAGGTTTTTTTGAGAAGAGATGCAGAATGAGTCTAC
ATCAACAAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCGTCATATGACCGGCCGGCGGCCCCGGCGCCGAGCAGACTCCCGCCGCCGCGATGGCC
CCGCCGCCGCCCCCGGCCGCGCGCTGAGCCGGCCGCGCGCCGCGGGAGCCGCAGCCGCGG
CGTCATGGCCCCGACCCTGCTCCAGAGGCTCTTCAACAAGAAGGGCGGAGGCAGCTCCGC
GGCAGCGGCGGCCCCTGGCCGTGCGCCTCGAGAGGGACCTGCCTTCAGTTGGTCGTGCTC
GGAGTTGGACCTGAATGAGATTCGCCTGATAGTTTACCAGGACTGTGAAAGGAGAGGCAG
ACAAGTCTTGTTTGATTCTAAAGCTGTGCACGAGATTGAGGAGGTGGCAACTCAGAAAAC
AGAGGACGTTGCTGGGAAAGCTTCGGCCAAGTGCTGCCACAGCGGCGGTGGCAGCCTCTC
TTCCCACGGTGCTCCTGGGAGCTCCTTCCAGCACACCAAGGAGCAGCTCCCCAAGTACCA
GTACACACGGCCAGCCTCCGACGTCAACATGCTGGGTGAGATGATGTTCGGCTCTGTCGC
CATGAGCTACAAGGGCTCCACCCTGAAGATACACTATATCCGGTGAGTTGGGGCAGCTTC
TGCAGCCATGCGACACAGACTGGGGTGCCCACCCTCTCATCAAACTCTTGTCTCTCCCTC
TTTGCCCTTCTGTTTGTCTCCAGCTCTCCTCCACAACTGATGATTAGTGGCTGTTTCTGG
ATGGGGTCATTATTTGGGGGCCAGGAGGTTTTTTTGAGAAGAGATGCAGAATGAGTCTAC
ATCAACAAAAGG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               3-231, gnl|bosTau2|chr17 (21941454-21941693)
               

               
               3-231, gnl|Hg17|chr4 (160047783-160048079)
               

               
               3-231, gnl|Mm7|chr3 (79672820-79672540)
               


               
               480-645, gnl|bosTau2|chr17 (20736819-20736985)
               

               
               480-645, gnl|Hg17|chr4 (160110616-160110784)
               

               
               480-645, gnl|Mm7|chr3 (79617634-79617470)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-231, gnl|bosTau2|chr17 (21941454-21941693)
               

               
               3-231, gnl|Hg17|chr4 (160047783-160048079)
               

               
               3-231, gnl|Mm7|chr3 (79672820-79672540)
               


               
               480-645, gnl|bosTau2|chr17 (20736819-20736985)
               

               
               480-645, gnl|Hg17|chr4 (160110616-160110784)
               

               
               480-645, gnl|Mm7|chr3 (79617634-79617470)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.280073)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)

	3-231, gnl\|bosTau2\|chr17 (21941454-21941693)
	3-231, gnl\|Hg17\|chr4 (160047783-160048079)
	3-231, gnl\|Mm7\|chr3 (79672820-79672540)

	480-645, gnl\|bosTau2\|chr17 (20736819-20736985)
	480-645, gnl\|Hg17\|chr4 (160110616-160110784)
	480-645, gnl\|Mm7\|chr3 (79617634-79617470)