Non-Coding RNA Search

Ss1.1-rcst11_g6.5

Sequence:


               
               CTAAGGAGAAGGCTCATGTCTGCTCTCCTGTGTCAAGGGCGGGGCCCAGAATATCTTCCT
CCCCAGCTGGGACCTGAGGACAGAAAGACAGGGGCCCACAGAGGGGATGTGGAGTCAGAT
GGGTCCCTCTGAAGACTGTTCCTGCCCCAGGCCTGTGTCTCTTGTCCCTGGGTCCACCCC
ATGTGACCAGGGCTGACCACAGCTAGGGAGCTGGCTGGGCCCCCAGGGACTCACACAGGA
TTTCTTTGCCCTCAGCAGGTCAACATGCCTTATGTCATGATCCCAGCCTTCCCCCCAAGC
CACCAACCTCTGCCTGTCACCCCTGACTCCCAGCTGGCTTTGCCCATTCAGCCCATCCCC
TGCAAGCCAGGTGAGCGTGGGCAGGGAGGGCTGACCGGTGGGCAGGGAAGGTGCCCAGGA
ACAGCTCTCATCCAGTCCCTGGCAGTGTGGCCTTTCTGGGCCTCAGTTTGGGTTCTGTCT
AGTGGAAGAACAATCCCTTCTTTCCAAATTTCACTGGGAAAGAAAAGAAGTAGCACATTG
AAAACCATAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAGGAGAAGGCTCATGTCTGCTCTCCTGTGTCAAGGGCGGGGCCCAGAATATCTTCCT
CCCCAGCTGGGACCTGAGGACAGAAAGACAGGGGCCCACAGAGGGGATGTGGAGTCAGAT
GGGTCCCTCTGAAGACTGTTCCTGCCCCAGGCCTGTGTCTCTTGTCCCTGGGTCCACCCC
ATGTGACCAGGGCTGACCACAGCTAGGGAGCTGGCTGGGCCCCCAGGGACTCACACAGGA
TTTCTTTGCCCTCAGCAGGTCAACATGCCTTATGTCATGATCCCAGCCTTCCCCCCAAGC
CACCAACCTCTGCCTGTCACCCCTGACTCCCAGCTGGCTTTGCCCATTCAGCCCATCCCC
TGCAAGCCAGGTGAGCGTGGGCAGGGAGGGCTGACCGGTGGGCAGGGAAGGTGCCCAGGA
ACAGCTCTCATCCAGTCCCTGGCAGTGTGGCCTTTCTGGGCCTCAGTTTGGGTTCTGTCT
AGTGGAAGAACAATCCCTTCTTTCCAAATTTCACTGGGAAAGAAAAGAAGTAGCACATTG
AAAACCATAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               24-254, - strand, RNAz p=0.878857

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               24-254, - strand, RNAz p=0.878857

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-538, gnl|bosTau2|chr23 (16433556-16433048)
               

               
               24-538, gnl|Hg17|chr1 (200818145-200818687)
               

               
               24-538, gnl|Mm7|chr1_random (7599104-7598628)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-538, gnl|bosTau2|chr23 (16433556-16433048)
               

               
               24-538, gnl|Hg17|chr1 (200818145-200818687)
               

               
               24-538, gnl|Mm7|chr1_random (7599104-7598628)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.280073)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)

	24-538, gnl\|bosTau2\|chr23 (16433556-16433048)
	24-538, gnl\|Hg17\|chr1 (200818145-200818687)
	24-538, gnl\|Mm7\|chr1_random (7599104-7598628)