Non-Coding RNA Search

Ss1.1-rcst11_j14.5

Sequence:


               
               AGCAGCGGCCACTTTGCTTGGGCCCCAGACCTTCATCTCTGAGATCAGAGGATAGGACTT
GGACGTAGCAGAAACTGGCCCATGAGCAGGTTCAAAGGCAAGGAAGGAGGGAGAAGAAAA
GAGCACGCAAACCAGCAGAATGTGGAATGGTCCCCTGGAACCACAATCGCAGGTTTCAGG
GACTCAGGAAGGGGTGCTGCCCAGCTTTGTGGTGGAGAAACGTCAGATGTTGGGAAGGGG
AAGGCCGCTTGCTGTCGCAGGGTTTCTCACCAGCCCCTGCCTATTAAGCCCCAGTGGCTT
GTCACTCCTTGGCTAACAGCTTGGCAGCACAGAGGCAAACCACAGAGTACATTGGAGGCC
CCAATCTGCCCATTTCCAGGGTGGGGCCGCATTTTTTTCCCACCACAAGGAGCTAATGAA
AGAAAACAAGCTCTGGGAGTTGGGAGAGGACTGGCCGCAGAGCACTTGGGGAGGATGGCG
CTGGCTGTGGAGGCGTCCACAGCCCCTGGAAGACAGGTGGAAGCAGGCAGATGGGCCCCA
TGCGTCCCCAAGGGAGCTCGGAGGACCCCCTGCTCCTCAGCTGGGAGAAGACCAAAGGTG
CAGCACCAGAGGGCTTGTGGGATGGGAGGGGATCTTGGTTTGGGAGGGGGCCAGCTGGAA
GAAGTTCAAGCTCCCTGTGAAGGTGGGTGGGTGTTCTGGAATGCCTCACAGAGGTGGGCT
TGTGCCCCAGACCGTGGACAGAGCCTGTGTGAGTTCTGTGAGAACTCACACAGGCTCAGT
AATTCACATCTCTGGGGCACTTTTGGTTCTGAACTCAGTAATTCACATCTCTGGGGCACT
TTTGGTTCTGGTACCAGCCTTGGGGAAAGTGGGCACAACTTCCGTTTTCCCTTAAGAGCA
AAGCGACACTCAAAGAGGAGTAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCAGCGGCCACTTTGCTTGGGCCCCAGACCTTCATCTCTGAGATCAGAGGATAGGACTT
GGACGTAGCAGAAACTGGCCCATGAGCAGGTTCAAAGGCAAGGAAGGAGGGAGAAGAAAA
GAGCACGCAAACCAGCAGAATGTGGAATGGTCCCCTGGAACCACAATCGCAGGTTTCAGG
GACTCAGGAAGGGGTGCTGCCCAGCTTTGTGGTGGAGAAACGTCAGATGTTGGGAAGGGG
AAGGCCGCTTGCTGTCGCAGGGTTTCTCACCAGCCCCTGCCTATTAAGCCCCAGTGGCTT
GTCACTCCTTGGCTAACAGCTTGGCAGCACAGAGGCAAACCACAGAGTACATTGGAGGCC
CCAATCTGCCCATTTCCAGGGTGGGGCCGCATTTTTTTCCCACCACAAGGAGCTAATGAA
AGAAAACAAGCTCTGGGAGTTGGGAGAGGACTGGCCGCAGAGCACTTGGGGAGGATGGCG
CTGGCTGTGGAGGCGTCCACAGCCCCTGGAAGACAGGTGGAAGCAGGCAGATGGGCCCCA
TGCGTCCCCAAGGGAGCTCGGAGGACCCCCTGCTCCTCAGCTGGGAGAAGACCAAAGGTG
CAGCACCAGAGGGCTTGTGGGATGGGAGGGGATCTTGGTTTGGGAGGGGGCCAGCTGGAA
GAAGTTCAAGCTCCCTGTGAAGGTGGGTGGGTGTTCTGGAATGCCTCACAGAGGTGGGCT
TGTGCCCCAGACCGTGGACAGAGCCTGTGTGAGTTCTGTGAGAACTCACACAGGCTCAGT
AATTCACATCTCTGGGGCACTTTTGGTTCTGAACTCAGTAATTCACATCTCTGGGGCACT
TTTGGTTCTGGTACCAGCCTTGGGGAAAGTGGGCACAACTTCCGTTTTCCCTTAAGAGCA
AAGCGACACTCAAAGAGGAGTAGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-736, gnl|bosTau2|chr10 (6410805-6410097)
               

               
               1-736, gnl|Hg17|chr15 (65177600-65178380)
               

               
               1-736, gnl|Mm7|chr9 (63755374-63754772)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-736, gnl|bosTau2|chr10 (6410805-6410097)
               

               
               1-736, gnl|Hg17|chr15 (65177600-65178380)
               

               
               1-736, gnl|Mm7|chr9 (63755374-63754772)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.280073)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)

	1-736, gnl\|bosTau2\|chr10 (6410805-6410097)
	1-736, gnl\|Hg17\|chr15 (65177600-65178380)
	1-736, gnl\|Mm7\|chr9 (63755374-63754772)