Non-Coding RNA Search

Ss1.1-rcst13_p1.5

Sequence:


               
               AAGATGAGTTATTAAAATCAAAAGAATACTTTGTGGCTGTGCTGTTTGTGCCAATAGACC
TTGCCATGACCAAAAAGAGGGATGTAAATAATTTTATAAAATACGATAGAATCAATAGGA
ACCTTTGCATTGCTCTATACATTCTGCCATTGACCCTCATCAGTTTTCTTGGTGAGATGA
TTTGACACAGGAAACTTTGGACTGTGTAAAAAAAAAAAAAAGGCCCCTTCTCAAGCCCCT
TGTCTGTCTTGCCAGTTCCACAGATGCATGTCTCCTATGCTGGATGCACCTTAGAGGGGA
AAAAATGGTTTAAAAAAAAAAAGAGAGAGAGAGCATTTAAGTAGTCATGCCTTGAAGTAC
TCTATCCTTTTGCTGGATGATGGTTATGAGAGAAGTTCTTGCTGTTGTTGGGAAATTGAG
CAAACAATGCTTGCTAGCAGTGCCCCTGTGAGCACCTGTCCTCCACTCCAGCCCCTCCCC
ACCCTTCCCCCTCCCCTCCGCACTCACACCCATCCCCGGACATCAGCCCTCTGGAATGCT
GGCAGTGAAGTGGTGTACTGTGTCTCTCTTAGCTAAATTGCTAGAGTATGTGCCGTGTAT
TCTTTCACTCAGGTCGACTGTTCTGTTGTCATCTTTCTGAACAACAGCAGGCAAAGGCAG
TTTGCAGCAAGAGGGAGGGGATGGGGGGTCGGGAGAAAGACCAGAAGGAGGAGGAGACAA
GTTTGGAAGGAACAAACCAACTATTTTGCTTCTAGTTTTAACAATATTGTTCTTCCCTGT
TGAAAACATACTTATTCACAATAATTCTGAAGTGTGGATCTTTGAAGGTCCAATTTTGAT
AAATTTGTGAGCCTCAGTAATGATAACTTTCTAGAGAAGCCCAGGGCTCTCTGGAGCTAG
AGTTTGGGGGAGAACAATTCTTCACCATTGAAATAAGGCAATGACTTTGAGAAGCAAAGC
AAATAAATCTTTCTCACGCTAGAACAAAAAGTCACAAAAGGCATAATCAGAAATAAATAC
TACTTGAGTTTATGGGATTTGTGTTGTTTGGAGGTTCTATGTTTGTGTGTATTCATTTTC
AAGGGGAACGTAGCCTTTACAGCCTTCATGCCTGTCACTCTGCTGCTTTTGTTTATATGC
TTCCACTGAGCAAGCTTACGTGATGCTTTGGTATCAACCATTGTCTATAGAGCAATACGT
CCTTTATCTTAGCTCATTTTTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATGAGTTATTAAAATCAAAAGAATACTTTGTGGCTGTGCTGTTTGTGCCAATAGACC
TTGCCATGACCAAAAAGAGGGATGTAAATAATTTTATAAAATACGATAGAATCAATAGGA
ACCTTTGCATTGCTCTATACATTCTGCCATTGACCCTCATCAGTTTTCTTGGTGAGATGA
TTTGACACAGGAAACTTTGGACTGTGTAAAAAAAAAAAAAAGGCCCCTTCTCAAGCCCCT
TGTCTGTCTTGCCAGTTCCACAGATGCATGTCTCCTATGCTGGATGCACCTTAGAGGGGA
AAAAATGGTTTAAAAAAAAAAAGAGAGAGAGAGCATTTAAGTAGTCATGCCTTGAAGTAC
TCTATCCTTTTGCTGGATGATGGTTATGAGAGAAGTTCTTGCTGTTGTTGGGAAATTGAG
CAAACAATGCTTGCTAGCAGTGCCCCTGTGAGCACCTGTCCTCCACTCCAGCCCCTCCCC
ACCCTTCCCCCTCCCCTCCGCACTCACACCCATCCCCGGACATCAGCCCTCTGGAATGCT
GGCAGTGAAGTGGTGTACTGTGTCTCTCTTAGCTAAATTGCTAGAGTATGTGCCGTGTAT
TCTTTCACTCAGGTCGACTGTTCTGTTGTCATCTTTCTGAACAACAGCAGGCAAAGGCAG
TTTGCAGCAAGAGGGAGGGGATGGGGGGTCGGGAGAAAGACCAGAAGGAGGAGGAGACAA
GTTTGGAAGGAACAAACCAACTATTTTGCTTCTAGTTTTAACAATATTGTTCTTCCCTGT
TGAAAACATACTTATTCACAATAATTCTGAAGTGTGGATCTTTGAAGGTCCAATTTTGAT
AAATTTGTGAGCCTCAGTAATGATAACTTTCTAGAGAAGCCCAGGGCTCTCTGGAGCTAG
AGTTTGGGGGAGAACAATTCTTCACCATTGAAATAAGGCAATGACTTTGAGAAGCAAAGC
AAATAAATCTTTCTCACGCTAGAACAAAAAGTCACAAAAGGCATAATCAGAAATAAATAC
TACTTGAGTTTATGGGATTTGTGTTGTTTGGAGGTTCTATGTTTGTGTGTATTCATTTTC
AAGGGGAACGTAGCCTTTACAGCCTTCATGCCTGTCACTCTGCTGCTTTTGTTTATATGC
TTCCACTGAGCAAGCTTACGTGATGCTTTGGTATCAACCATTGTCTATAGAGCAATACGT
CCTTTATCTTAGCTCATTTTTCTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               561-659, + strand, RNAz p=0.84876

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               561-659, + strand, RNAz p=0.84876

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_031305, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_031305, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-485, gnl|bosTau2|chr6 (56567370-56566904)
               

               
               2-485, gnl|Hg17|chr4 (87279531-87280007)
               


               
               509-1224, gnl|bosTau2|chr6 (56566913-56566197)
               

               
               509-1224, gnl|canFam2|chr32 (12536242-12536949)
               

               
               509-1224, gnl|echTel1|scaffold_103048 (812-1458)
               

               
               509-1224, gnl|hg17|chr4 (87279869-87280576)
               

               
               509-1224, gnl|Hg17|chr4 (87279995-87280694)
               

               
               509-1224, gnl|mm7|chr5 (102087163-102087988)
               

               
               509-1224, gnl|Mm7|chr5 (102087453-102088107)
               

               
               509-1224, gnl|oryCun1|scaffold_209308 (85398-86091)
               

               
               509-1224, gnl|panTro1|chr3 (103282055-103282767)
               

               
               509-1224, gnl|rheMac2|chr5 (78949053-78949773)
               

               
               509-1224, gnl|rn3|chr14 (8024900-8024243)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-485, gnl|bosTau2|chr6 (56567370-56566904)
               

               
               2-485, gnl|Hg17|chr4 (87279531-87280007)
               


               
               509-1224, gnl|bosTau2|chr6 (56566913-56566197)
               

               
               509-1224, gnl|canFam2|chr32 (12536242-12536949)
               

               
               509-1224, gnl|echTel1|scaffold_103048 (812-1458)
               

               
               509-1224, gnl|hg17|chr4 (87279869-87280576)
               

               
               509-1224, gnl|Hg17|chr4 (87279995-87280694)
               

               
               509-1224, gnl|mm7|chr5 (102087163-102087988)
               

               
               509-1224, gnl|Mm7|chr5 (102087453-102088107)
               

               
               509-1224, gnl|oryCun1|scaffold_209308 (85398-86091)
               

               
               509-1224, gnl|panTro1|chr3 (103282055-103282767)
               

               
               509-1224, gnl|rheMac2|chr5 (78949053-78949773)
               

               
               509-1224, gnl|rn3|chr14 (8024900-8024243)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (0.140036)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)
               

               
               lyg (0.133103)

	2-485, gnl\|bosTau2\|chr6 (56567370-56566904)
	2-485, gnl\|Hg17\|chr4 (87279531-87280007)

	509-1224, gnl\|bosTau2\|chr6 (56566913-56566197)
	509-1224, gnl\|canFam2\|chr32 (12536242-12536949)
	509-1224, gnl\|echTel1\|scaffold_103048 (812-1458)
	509-1224, gnl\|hg17\|chr4 (87279869-87280576)
	509-1224, gnl\|Hg17\|chr4 (87279995-87280694)
	509-1224, gnl\|mm7\|chr5 (102087163-102087988)
	509-1224, gnl\|Mm7\|chr5 (102087453-102088107)
	509-1224, gnl\|oryCun1\|scaffold_209308 (85398-86091)
	509-1224, gnl\|panTro1\|chr3 (103282055-103282767)
	509-1224, gnl\|rheMac2\|chr5 (78949053-78949773)
	509-1224, gnl\|rn3\|chr14 (8024900-8024243)