Non-Coding RNA Search

Ss1.1-rcst14_g22.5.5

Sequence:


               
               GCGAGGGGTGGAGAGGCCTGGCGGGCCGGGCAGGGGCAGCAGCGGCCCGCTGTCCCTCCG
GCAGACGTCCCTATTCCCCTTTCCCCCTCCCCGACCTTGGAGGGGTATGGCCCCCTTGAC
GAGGCCCTGAGACCCGGGCGGGGCGCCCACGTTCGGGACATTTCAGTGGGAAAGGGCCGC
TCTCAAAGTGGATTATTCCAACTGCCCCGGGGGCGGGAAGCGGGGATCCTCCCCCGGCCG
CAAATCCGCGAAGACCATCACAAACGAAAATGAAGACGACCTGGAGTCGCGGTCCTCAGG
GTCCCCCTCCAACTGCTTCGGCTTCGTCGCCTACTCAGTGAACGCTGGAGAGAAACCGCG
AGTCAAAATCAAGTCCTTGACCCACCAGCCTTCGTATTCCTGCTCATCCCGGTCGGATCT
CGACCCCTCCCCGACTCCGACTCCCTCTCCCTCTCCGTCTCCCTCGCCCAGAAAGCTCCG
GTGCGTGGACCAGCGGGAGCCCGAGACCCACGAGAGGCGCGAACGCAGCTCCAAAAGGAG
AAGGGCTAAGGAGGGCAACCCCATCGATACCATTGACCTTATGTGGCTGGGAACACCGTC
CACCATGGCCACCTCAGCGAGCTCCCACTTGAACAAAGGCATCAAGCAGGTGTACATGTC
CCTGCCCCAGGGCGAGAAAGTCCAAGCTATGTACATCTGGATTGACGGTACGGGAGAGGG
ACTGCGCTGCAAGACCCGGACCCTGGATTCTGAGCCCAAGTGTATAGAAGAGTTGCCCGA
GTGGAATTTCGATGGCTCTAGTACTTTTCAGTCTGAAGGCTCCAACAGTGACATGTATCT
TGTCCCTGCTGCCATGTTTCGGGACCCTTTCCGCAAGGACCCCAACAAGCTGGTGTTCTG
TGAGGTCTTCAAGTACAACCGAAAGCCTGCAGAGACCAACTTAAGGCACACCTGTAAACG
GATAATGGACATGGTGAGCAACCAGCACCCCTGGTTTGGAATGGAGCAGGAATATACTCT
CATGGGCACAGATGGACACCCCTTTGGTTGGCCTTCCAATGGCTTCCCTGGGCCCCAAGG
TCCGTACTATTGTGGTGTTGGAGCAGACAAAGCCTATGGCAGGGACATTGTGGAGGCTCA
CTACCGGGCCTGCTTGTATGCCGGCATCAAGATTGGGGGCACCAATGCCGAGGTCATGCC
CGCCCAGTGGGAATTCCAGATCGGACCCTGTGAAGGAATCGACATGGGAGATCACCTCTG
GGTGGCCCGATTCATCTTGCATCGTGTGTGCGAAGACTTCGGAGTGATCGCCACCTTTGA
TCCTAAGCCCATTCCTGGGAACTGGAATGGTGCCGGCTGCCACACCAACTTTAGCACCAA
GGCCATGCGAGAGGAGAATGGTCTGAAGTACATCGAGGAGGCCATCGAGAAGCTAAGCAA
GCGGCACCAGTACCACATCCGAGCCTACGATCCCAAGGGGGGCCTGGACAACGCCCGGCG
CCTAACTGGATTCCATGAAACCTCCAACATCAACGACTTTTCTGCCGGCGTGGCCAACCG
TGGCGCTAGCATCCGCATTCCCCGGACTGTCGGCCAGGAGAAGAAGGGTTACTTCGAAGA
CCGTCGCCCTTCTGCCAACTGTGACCCCTTTGCGGTGACAGAAGCTCTCATCCGCACGTG
TCTCCTCAACGAAACTGGCGACGAGCCCTTCCAGTACAAAAACTAAGTGGACTAGACGGG
CAGCCATCAAAACCCCTCCTAATTCTACACCGCCCCCCCCCCTCGCCCCTCTCAACTGTC
GTAATAGCTGTAACTCAAAGGGCGGAATAGCAAGGTCTTTTTTATTCCTCATGCCCAGTT
AATATCTCTTGCTTTCTTTGGCCAGGATAGAGGGCTCAAGTTCCTAATCTCTTCACACAC
ACCCCCCGCCCCTTTTTTTCCCTATCACTGAAGTTTCTAGTGTGTTAGTGGGGAGGGAGG
TGGGGAGTCATAACCACTGCTTCCATTTCATCAGGTGTGTTTGTCCAGTAGGCACAGCTA
TCCGGACAGAGAACATAGTCTTTGTGCAGGGAAGGGGCAGACTTTCTCTGAGTGGTAGTT
GAGTCAGGGGTCAGAGGACCTGACTTTGGTTCGGTTAGAAGTCTCCTTCTTGGTTGGTGG
GCCTTCCATTCCTTAGAAGGTTAGAACCAACTTTCTCTTAAGGGTGAGCATTAGGAGAGA
AGGAAGGGTGGGAAATGAGGTAGGAAAATGCCCTCGATCTGGTGTGGTATTTCCCTTGCC
TGGGGCTAAAGGCCCTGATTATGTTCGGCGTAAATGGATGGCTAGCCCTACCTTAAAAGA
AAAAGTTCTTACTGTCTGGTCCATTTATAACACAAAGAAGAGTAGTATTTTTATATTTAA
ATGTAAAAACAAAAAAATTATATATATGGGTGTGCAGATAAATGGTTTTTTTTTTTTTTT
TTCCTAAGAGAGAAAACCATTCTGGTCACTGGGAGCCAAATTTGAGACGGTAGTCTGGTT
AGAAATAAGGATCTCTGGAGTTCCCACTGTGGCGCAGTGGGTTAAGATTCCCACTGCAGC
GGCTTGGGCCACTGTGGAGGTGCAGGTTCGATCCCCACCCATGTGCAGGGGGTTAAAGGA
TCTAGAGTTGTTGCAACTACGGCTTGGGATTCATTCCCCAGCCCTGGTGAAAACTTCCAT
ATGCTATGGGTGTGGCCATTAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGGGGTGGAGAGGCCTGGCGGGCCGGGCAGGGGCAGCAGCGGCCCGCTGTCCCTCCG
GCAGACGTCCCTATTCCCCTTTCCCCCTCCCCGACCTTGGAGGGGTATGGCCCCCTTGAC
GAGGCCCTGAGACCCGGGCGGGGCGCCCACGTTCGGGACATTTCAGTGGGAAAGGGCCGC
TCTCAAAGTGGATTATTCCAACTGCCCCGGGGGCGGGAAGCGGGGATCCTCCCCCGGCCG
CAAATCCGCGAAGACCATCACAAACGAAAATGAAGACGACCTGGAGTCGCGGTCCTCAGG
GTCCCCCTCCAACTGCTTCGGCTTCGTCGCCTACTCAGTGAACGCTGGAGAGAAACCGCG
AGTCAAAATCAAGTCCTTGACCCACCAGCCTTCGTATTCCTGCTCATCCCGGTCGGATCT
CGACCCCTCCCCGACTCCGACTCCCTCTCCCTCTCCGTCTCCCTCGCCCAGAAAGCTCCG
GTGCGTGGACCAGCGGGAGCCCGAGACCCACGAGAGGCGCGAACGCAGCTCCAAAAGGAG
AAGGGCTAAGGAGGGCAACCCCATCGATACCATTGACCTTATGTGGCTGGGAACACCGTC
CACCATGGCCACCTCAGCGAGCTCCCACTTGAACAAAGGCATCAAGCAGGTGTACATGTC
CCTGCCCCAGGGCGAGAAAGTCCAAGCTATGTACATCTGGATTGACGGTACGGGAGAGGG
ACTGCGCTGCAAGACCCGGACCCTGGATTCTGAGCCCAAGTGTATAGAAGAGTTGCCCGA
GTGGAATTTCGATGGCTCTAGTACTTTTCAGTCTGAAGGCTCCAACAGTGACATGTATCT
TGTCCCTGCTGCCATGTTTCGGGACCCTTTCCGCAAGGACCCCAACAAGCTGGTGTTCTG
TGAGGTCTTCAAGTACAACCGAAAGCCTGCAGAGACCAACTTAAGGCACACCTGTAAACG
GATAATGGACATGGTGAGCAACCAGCACCCCTGGTTTGGAATGGAGCAGGAATATACTCT
CATGGGCACAGATGGACACCCCTTTGGTTGGCCTTCCAATGGCTTCCCTGGGCCCCAAGG
TCCGTACTATTGTGGTGTTGGAGCAGACAAAGCCTATGGCAGGGACATTGTGGAGGCTCA
CTACCGGGCCTGCTTGTATGCCGGCATCAAGATTGGGGGCACCAATGCCGAGGTCATGCC
CGCCCAGTGGGAATTCCAGATCGGACCCTGTGAAGGAATCGACATGGGAGATCACCTCTG
GGTGGCCCGATTCATCTTGCATCGTGTGTGCGAAGACTTCGGAGTGATCGCCACCTTTGA
TCCTAAGCCCATTCCTGGGAACTGGAATGGTGCCGGCTGCCACACCAACTTTAGCACCAA
GGCCATGCGAGAGGAGAATGGTCTGAAGTACATCGAGGAGGCCATCGAGAAGCTAAGCAA
GCGGCACCAGTACCACATCCGAGCCTACGATCCCAAGGGGGGCCTGGACAACGCCCGGCG
CCTAACTGGATTCCATGAAACCTCCAACATCAACGACTTTTCTGCCGGCGTGGCCAACCG
TGGCGCTAGCATCCGCATTCCCCGGACTGTCGGCCAGGAGAAGAAGGGTTACTTCGAAGA
CCGTCGCCCTTCTGCCAACTGTGACCCCTTTGCGGTGACAGAAGCTCTCATCCGCACGTG
TCTCCTCAACGAAACTGGCGACGAGCCCTTCCAGTACAAAAACTAAGTGGACTAGACGGG
CAGCCATCAAAACCCCTCCTAATTCTACACCGCCCCCCCCCCTCGCCCCTCTCAACTGTC
GTAATAGCTGTAACTCAAAGGGCGGAATAGCAAGGTCTTTTTTATTCCTCATGCCCAGTT
AATATCTCTTGCTTTCTTTGGCCAGGATAGAGGGCTCAAGTTCCTAATCTCTTCACACAC
ACCCCCCGCCCCTTTTTTTCCCTATCACTGAAGTTTCTAGTGTGTTAGTGGGGAGGGAGG
TGGGGAGTCATAACCACTGCTTCCATTTCATCAGGTGTGTTTGTCCAGTAGGCACAGCTA
TCCGGACAGAGAACATAGTCTTTGTGCAGGGAAGGGGCAGACTTTCTCTGAGTGGTAGTT
GAGTCAGGGGTCAGAGGACCTGACTTTGGTTCGGTTAGAAGTCTCCTTCTTGGTTGGTGG
GCCTTCCATTCCTTAGAAGGTTAGAACCAACTTTCTCTTAAGGGTGAGCATTAGGAGAGA
AGGAAGGGTGGGAAATGAGGTAGGAAAATGCCCTCGATCTGGTGTGGTATTTCCCTTGCC
TGGGGCTAAAGGCCCTGATTATGTTCGGCGTAAATGGATGGCTAGCCCTACCTTAAAAGA
AAAAGTTCTTACTGTCTGGTCCATTTATAACACAAAGAAGAGTAGTATTTTTATATTTAA
ATGTAAAAACAAAAAAATTATATATATGGGTGTGCAGATAAATGGTTTTTTTTTTTTTTT
TTCCTAAGAGAGAAAACCATTCTGGTCACTGGGAGCCAAATTTGAGACGGTAGTCTGGTT
AGAAATAAGGATCTCTGGAGTTCCCACTGTGGCGCAGTGGGTTAAGATTCCCACTGCAGC
GGCTTGGGCCACTGTGGAGGTGCAGGTTCGATCCCCACCCATGTGCAGGGGGTTAAAGGA
TCTAGAGTTGTTGCAACTACGGCTTGGGATTCATTCCCCAGCCCTGGTGAAAACTTCCAT
ATGCTATGGGTGTGGCCATTAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|47522666|ref|NP_999074.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522666|ref|NP_999074.1|

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               593-702, gnl|bosTau2|chr10 (56944304-56944195)
               

               
               593-702, gnl|Hg17|chr9 (34907160-34907269)
               

               
               593-702, gnl|Mm7|chr11 (19672352-19672461)
               


               
               766-1679, gnl|bosTau2|chr10 (56944184-56943314)
               

               
               766-1679, gnl|Hg17|chr9 (34907333-34908238)
               

               
               766-1679, gnl|Mm7|chr11 (19672472-19673426)
               


               
               2124-2520, gnl|bosTau2|chr3 (50324966-50324570)
               

               
               2124-2520, gnl|Hg17|chr1 (179084815-179084420)
               

               
               2124-2520, gnl|Mm7|chr1 (153869273-153869651)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               593-702, gnl|bosTau2|chr10 (56944304-56944195)
               

               
               593-702, gnl|Hg17|chr9 (34907160-34907269)
               

               
               593-702, gnl|Mm7|chr11 (19672352-19672461)
               


               
               766-1679, gnl|bosTau2|chr10 (56944184-56943314)
               

               
               766-1679, gnl|Hg17|chr9 (34907333-34908238)
               

               
               766-1679, gnl|Mm7|chr11 (19672472-19673426)
               


               
               2124-2520, gnl|bosTau2|chr3 (50324966-50324570)
               

               
               2124-2520, gnl|Hg17|chr1 (179084815-179084420)
               

               
               2124-2520, gnl|Mm7|chr1 (153869273-153869651)

Expressed library(ies): 36 entry(ies)

More info

Expressed library(ies): 36 entry(ies)

Help | Less info


               
               cst (0.980255)
               

               
               ton (0.702001)
               

               
               hyp (0.571347)
               

               
               cly (0.482567)
               

               
               clu (0.478583)
               

               
               cag (0.453583)
               

               
               cty (0.41632)
               

               
               che (0.408942)
               

               
               pla (0.401016)
               

               
               med (0.348756)
               

               
               jca (0.34188)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.980255)
               

               
               ton (0.702001)
               

               
               hyp (0.571347)
               

               
               cly (0.482567)
               

               
               clu (0.478583)
               

               
               cag (0.453583)
               

               
               cty (0.41632)
               

               
               che (0.408942)
               

               
               pla (0.401016)
               

               
               med (0.348756)
               

               
               jca (0.34188)
               

               
               ssp (0.271039)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	593-702, gnl\|bosTau2\|chr10 (56944304-56944195)
	593-702, gnl\|Hg17\|chr9 (34907160-34907269)
	593-702, gnl\|Mm7\|chr11 (19672352-19672461)

	766-1679, gnl\|bosTau2\|chr10 (56944184-56943314)
	766-1679, gnl\|Hg17\|chr9 (34907333-34908238)
	766-1679, gnl\|Mm7\|chr11 (19672472-19673426)

	2124-2520, gnl\|bosTau2\|chr3 (50324966-50324570)
	2124-2520, gnl\|Hg17\|chr1 (179084815-179084420)
	2124-2520, gnl\|Mm7\|chr1 (153869273-153869651)

	cst (0.980255)
	ton (0.702001)
	hyp (0.571347)
	cly (0.482567)
	clu (0.478583)
	cag (0.453583)
	cty (0.41632)
	che (0.408942)
	pla (0.401016)
	med (0.348756)
	jca (0.34188)
	ssp (0.271039)
	nms (0.213858)
	mas (0.210305)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	nlu (0.191681)
	cmu (0.186393)
	nep (0.183925)
	fbs (0.175346)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	cki (0.165235)
	nco (0.161734)
	csp (0.161186)
	cli (0.152812)
	nmm (0.132802)
	ute (0.132784)
	tra (0.123092)
	eep (0.122564)
	pgl (0.118483)
	ebs (0.118301)
	spc (0.113366)
	ldo (0.0970026)