Non-Coding RNA Search

Ss1.1-rcst15_c12.5

Sequence:


               
               GCAGGCCCTGGACTGGTTCCGGGCTCGCTACCGCTCCCCCGTCTTTGTGGTCTCCAGCAA
CGGCATGGCCTGGTGTCGGGAAAACATCAATGCCTCGCGCGGCGATGTGGTGTTTGCCGG
CAATGGCATCGAGGGCTCCCCCGCCAAAGACTTCGCGCTGCTCACGCAGTGTAACCACAC
TGTCATGACCATTGGCACGTTCGGGATCTGGGCCGCCTACCTTGCTGGTGGAGAGACCAT
CTACCTGGCCAATTACACGCTCCCGGACTCTCCCTTCCTCAAACTCTTTAAGCCCGAGGC
AGCCTTCCTGCCCGAGTGGATTGGGATCGAGGCAGACCTGTCCCCACTCCTTAAGCACTG
ATGTCGGCTGGTCCTCGGCTCCCCATTCTTCTTTTCTGGCTCCCCCCAAGATCACTTCCA
AGGCACAGGGAGCACACATTGTTCCATGTTCCAAGTCACTTCCCTCTTGTATCATAATGC
TTCCAGCTACAAGCAACAAAGTCCCAACTAACTTGTGTAAATAACATGTTTGTGTATCTC
ACACCACAGGGCCCAGAGGTGGTGCATCTCCAGGGTTAGTTACTTTAGTAACTGAAAAAT
GTCGTCAGTGACCCCAGCTCCATCCATCTGGTTGGGCTGCCATAATGTCTTAAATCAGCT
CCGACACGGTCCTCCTGGCCCCGAGAGGCTGCCACATTCCCAGGTGTCCCACACAGATAA
CCTCTTCCCAGCGCAGCAAAGAGAGATCTGCGCTTAAGTACCTTTTGAAGAATGTGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGGCCCTGGACTGGTTCCGGGCTCGCTACCGCTCCCCCGTCTTTGTGGTCTCCAGCAA
CGGCATGGCCTGGTGTCGGGAAAACATCAATGCCTCGCGCGGCGATGTGGTGTTTGCCGG
CAATGGCATCGAGGGCTCCCCCGCCAAAGACTTCGCGCTGCTCACGCAGTGTAACCACAC
TGTCATGACCATTGGCACGTTCGGGATCTGGGCCGCCTACCTTGCTGGTGGAGAGACCAT
CTACCTGGCCAATTACACGCTCCCGGACTCTCCCTTCCTCAAACTCTTTAAGCCCGAGGC
AGCCTTCCTGCCCGAGTGGATTGGGATCGAGGCAGACCTGTCCCCACTCCTTAAGCACTG
ATGTCGGCTGGTCCTCGGCTCCCCATTCTTCTTTTCTGGCTCCCCCCAAGATCACTTCCA
AGGCACAGGGAGCACACATTGTTCCATGTTCCAAGTCACTTCCCTCTTGTATCATAATGC
TTCCAGCTACAAGCAACAAAGTCCCAACTAACTTGTGTAAATAACATGTTTGTGTATCTC
ACACCACAGGGCCCAGAGGTGGTGCATCTCCAGGGTTAGTTACTTTAGTAACTGAAAAAT
GTCGTCAGTGACCCCAGCTCCATCCATCTGGTTGGGCTGCCATAATGTCTTAAATCAGCT
CCGACACGGTCCTCCTGGCCCCGAGAGGCTGCCACATTCCCAGGTGTCCCACACAGATAA
CCTCTTCCCAGCGCAGCAAAGAGAGATCTGCGCTTAAGTACCTTTTGAAGAATGTGGGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1085553|pir||S46494

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1085553|pir||S46494

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-780, gnl|bosTau2|chr18 (49888639-49889414)
               

               
               1-780, gnl|Hg17|chr19 (53898697-53899792)
               

               
               1-780, gnl|Mm7|chr7 (41826757-41826053)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr18 (49888639-49889414)
               

               
               1-780, gnl|Hg17|chr19 (53898697-53899792)
               

               
               1-780, gnl|Mm7|chr7 (41826757-41826053)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               cst (0.140036)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               cst (0.140036)
               

               
               cty (0.10408)

	1-780, gnl\|bosTau2\|chr18 (49888639-49889414)
	1-780, gnl\|Hg17\|chr19 (53898697-53899792)
	1-780, gnl\|Mm7\|chr7 (41826757-41826053)