Non-Coding RNA Search

Ss1.1-rcst15_c22.5

Sequence:


               
               CAGGGACCTCGAACCAGGGCAGCTAATGCTATAACAAAAAATAATGACTTAGTTCGCAAG
AGGCGAGTTGAAGGAGACCACCAGTAAGTCCACCAGGTATAATCTGTGGGAGACTTTGAA
GCTCACCAAGGCCTCCTGTTGTGATGTCAGATAATAACATTTTCCTGGGTAGAAGGGAAA
AGACTGGAAATCTTTTTTTTTTTTTAAACTACATGTATCTTTTCTAGTTTAAGTTGTTAC
CAATTTTAAATTGTAAAATCAATAGTAGATATTTTGTATTCTAAAGCAGTATTTCTACTT
TCTACTAAAATCAGTTTTAATTTAGCTTAATTAAATGGTTTATGTTAAGTCTTGGGTTAA
AAAAAACACAATTGTACAGAGTTTAGAAAGTCATTTATGTATTATGAACATTTTTAAGAA
ACAATCTTTTTTAAGTCAAAAAAGGGACATTGTCAGAATTGCTGTTGCACCTCTTAGGTA
CAAGGCACATCAAAACTTTCCTTATTCATGGCATGGACACTTTTTCCATGGTTCAGAACA
CATAAACTTGGCAAGACTGTGTCTTTTGTTACTAGCAAAGCAAACGCCAGCATTTTAAAA
CAGGCTACTCAAAATCTAGTCGTGTTTTGGACCAAAGCCGATTTCTGGGAGAGAGGATGC
GGTGCGTCCCATGTCCCCGCACCTGCCCGAGGGCCTCAGCCACACCTACAGTTGTTTTCA
ACAGTCATCAGCTTGGTCAGGTTACACACTTTGCTTAAAAGCACAGCTATGTCTACATTC
ATTACAGTTTTTCTTTTTAATCATGTGGGCATTATTTTTGTGAAAGCTCAGAGTAATAAA
ATTATTAGAGCAGGAAAACTATTTTCTTCCCTATAAGAGGCATGCAGCCAACTCTGAGTT
ATTTGGGGTAAAAGAAAAAAGAAAGCTGTTGTTAAACACATGAAATCAAAGGTAATAAAT
GGTGGAGTTTAAGTCTGAGGAGCATGCAGAATGGTCATTTAAATTGATGGTCACTATAAA
GTAATTAAGAAACCAGCCTGGGTATAAGCTGAGAGTTGCACAGGAGAGTGAGACGTTCCC
ATATGCAGTGCAGAATTGCCTGAGTGGTGTGTAATCGCCACTTATCCAGATTTTCTAACC
AATAAGGAAAATGGCTGTTCTTGATAAATCTAATTTTTATTATCTCTTTCCTTTGATCTT
GTACTTTTTGGTCCACATCTATAGAAGTAATTTTTCATAACACCAGTTGTCTGCTCTTGC
TCAAAGTATTAGAGTGAACAGTTGAACAGTGTACTAGGGTGGGAAGACAGACTCCACATC
CAATAGTGTGATGGACAAGTTAGACCTGTATTCACACCCTGTTCCAGGGCAGCCTCTGGA
GCAGGAGGTGGCTGAGGTGTTATAGCTACAAAAGATAGGACAAAGAAATCTGAGCAGTTG
TGGCCTAACAATTCAGGCCTGGCTGTATCACTTACAGGGAGATTTTTCCTAAAGCGAAGA
ATCTCATTTCAGTATCCAGGGTGGGGAGGGGGAGGGCTGTTAATTTTTTAAGAAATTTTT
ATAATTGAAGTATAAAATGTCTGCTCCTTTGGCTTGGGCTGGACTGTTTACCTAATGAGC
TAGGCAGCTCCTTGTGTACTATTGTAATAAGCCTTCTTAACAGGCAACAGCTTTCCTCAT
GAGAACTGAGTGTGTGTCTTTTTGAATCAGTATCCATTGTTTTAAAGGGGCCAAAAAATG
ACTTTGCACTATTCTGCTGCTCCCTTTCAGTTATAGGGTGCTGGGCTTTTATTTTATTTT
TTTCAAGTAAGCAGGTCAAGCTCACTCTCCCCCACCCCCTTGTCATAAGCGAATTTGGAA
ATGAACTTGATTTTAGAGACTGCACAGTTCCAGCAGGGTGGGGCCTCAGCATGGACCAGG
TATGCAGAACTACTAGTCTACTTTCAGCAAGGTCTCCTTGCTTGCCTTGACCTATTAGTC
AATACATTACCCTTTCCTCCCCAAAGTTTTTTTAATACAGGTTAGGTGGGACCCTCCCTA
GAATTGTGTTATCATACTTACGAGTAATGTCTTTTTCACTTATTATTTATCAAAGTGTGA
TAAAAGTTGAGTGTTTTGCTTGTACCATTCCAATTCTGAGCTACAACAGTTAATTATATA
ATTGAAGAAAAGATTTCTTAATAAATAAGCATGAACATTCATCTGATTGAGTACAGAAAA
TCTTTCAAGTGTTGTAATTATAAGGGAGAAAACTGGGTGTTTACTTTGATCTTTAAAAAT
CTGGCACCTTTTACCCTTTTAATAACTTTCAGTATTTCTATACTGCTCTAAAATTTTATA
ATAGATTAAGGTTGTGAAGTACTCCTGATTTTTTTTAAACCAAAGATTTTCTAATAATTT
AAGTTTTTGTAGTCTAATCAATATAAACATATCTGGTTATCTAAACAAAGAATATTCTTT
GCATTTTTAAATTTGTTTTTTTAAAAGCTTTCAATTTCGGAGTTCCCGTCGTGGTGCAGT
GGTTAATGAATCTGACTAGGAACCATGAGGTTGCGGGTTCAATCCCTGGCCTTGCTCAGT
GGATTAAGGATCTGTTGTGAGCTGTAATGTAGGTCACAGACTCGGCTTGGATCCTGCGTT
GCTGTGGCTCTGGCGTAGGCCAGTGGCTATAGCTCTGATTCGACCCCTAGCCTGGGAACC
TCCATATGCCACAGGAGCAGCTCTAGAAAAACTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGGACCTCGAACCAGGGCAGCTAATGCTATAACAAAAAATAATGACTTAGTTCGCAAG
AGGCGAGTTGAAGGAGACCACCAGTAAGTCCACCAGGTATAATCTGTGGGAGACTTTGAA
GCTCACCAAGGCCTCCTGTTGTGATGTCAGATAATAACATTTTCCTGGGTAGAAGGGAAA
AGACTGGAAATCTTTTTTTTTTTTTAAACTACATGTATCTTTTCTAGTTTAAGTTGTTAC
CAATTTTAAATTGTAAAATCAATAGTAGATATTTTGTATTCTAAAGCAGTATTTCTACTT
TCTACTAAAATCAGTTTTAATTTAGCTTAATTAAATGGTTTATGTTAAGTCTTGGGTTAA
AAAAAACACAATTGTACAGAGTTTAGAAAGTCATTTATGTATTATGAACATTTTTAAGAA
ACAATCTTTTTTAAGTCAAAAAAGGGACATTGTCAGAATTGCTGTTGCACCTCTTAGGTA
CAAGGCACATCAAAACTTTCCTTATTCATGGCATGGACACTTTTTCCATGGTTCAGAACA
CATAAACTTGGCAAGACTGTGTCTTTTGTTACTAGCAAAGCAAACGCCAGCATTTTAAAA
CAGGCTACTCAAAATCTAGTCGTGTTTTGGACCAAAGCCGATTTCTGGGAGAGAGGATGC
GGTGCGTCCCATGTCCCCGCACCTGCCCGAGGGCCTCAGCCACACCTACAGTTGTTTTCA
ACAGTCATCAGCTTGGTCAGGTTACACACTTTGCTTAAAAGCACAGCTATGTCTACATTC
ATTACAGTTTTTCTTTTTAATCATGTGGGCATTATTTTTGTGAAAGCTCAGAGTAATAAA
ATTATTAGAGCAGGAAAACTATTTTCTTCCCTATAAGAGGCATGCAGCCAACTCTGAGTT
ATTTGGGGTAAAAGAAAAAAGAAAGCTGTTGTTAAACACATGAAATCAAAGGTAATAAAT
GGTGGAGTTTAAGTCTGAGGAGCATGCAGAATGGTCATTTAAATTGATGGTCACTATAAA
GTAATTAAGAAACCAGCCTGGGTATAAGCTGAGAGTTGCACAGGAGAGTGAGACGTTCCC
ATATGCAGTGCAGAATTGCCTGAGTGGTGTGTAATCGCCACTTATCCAGATTTTCTAACC
AATAAGGAAAATGGCTGTTCTTGATAAATCTAATTTTTATTATCTCTTTCCTTTGATCTT
GTACTTTTTGGTCCACATCTATAGAAGTAATTTTTCATAACACCAGTTGTCTGCTCTTGC
TCAAAGTATTAGAGTGAACAGTTGAACAGTGTACTAGGGTGGGAAGACAGACTCCACATC
CAATAGTGTGATGGACAAGTTAGACCTGTATTCACACCCTGTTCCAGGGCAGCCTCTGGA
GCAGGAGGTGGCTGAGGTGTTATAGCTACAAAAGATAGGACAAAGAAATCTGAGCAGTTG
TGGCCTAACAATTCAGGCCTGGCTGTATCACTTACAGGGAGATTTTTCCTAAAGCGAAGA
ATCTCATTTCAGTATCCAGGGTGGGGAGGGGGAGGGCTGTTAATTTTTTAAGAAATTTTT
ATAATTGAAGTATAAAATGTCTGCTCCTTTGGCTTGGGCTGGACTGTTTACCTAATGAGC
TAGGCAGCTCCTTGTGTACTATTGTAATAAGCCTTCTTAACAGGCAACAGCTTTCCTCAT
GAGAACTGAGTGTGTGTCTTTTTGAATCAGTATCCATTGTTTTAAAGGGGCCAAAAAATG
ACTTTGCACTATTCTGCTGCTCCCTTTCAGTTATAGGGTGCTGGGCTTTTATTTTATTTT
TTTCAAGTAAGCAGGTCAAGCTCACTCTCCCCCACCCCCTTGTCATAAGCGAATTTGGAA
ATGAACTTGATTTTAGAGACTGCACAGTTCCAGCAGGGTGGGGCCTCAGCATGGACCAGG
TATGCAGAACTACTAGTCTACTTTCAGCAAGGTCTCCTTGCTTGCCTTGACCTATTAGTC
AATACATTACCCTTTCCTCCCCAAAGTTTTTTTAATACAGGTTAGGTGGGACCCTCCCTA
GAATTGTGTTATCATACTTACGAGTAATGTCTTTTTCACTTATTATTTATCAAAGTGTGA
TAAAAGTTGAGTGTTTTGCTTGTACCATTCCAATTCTGAGCTACAACAGTTAATTATATA
ATTGAAGAAAAGATTTCTTAATAAATAAGCATGAACATTCATCTGATTGAGTACAGAAAA
TCTTTCAAGTGTTGTAATTATAAGGGAGAAAACTGGGTGTTTACTTTGATCTTTAAAAAT
CTGGCACCTTTTACCCTTTTAATAACTTTCAGTATTTCTATACTGCTCTAAAATTTTATA
ATAGATTAAGGTTGTGAAGTACTCCTGATTTTTTTTAAACCAAAGATTTTCTAATAATTT
AAGTTTTTGTAGTCTAATCAATATAAACATATCTGGTTATCTAAACAAAGAATATTCTTT
GCATTTTTAAATTTGTTTTTTTAAAAGCTTTCAATTTCGGAGTTCCCGTCGTGGTGCAGT
GGTTAATGAATCTGACTAGGAACCATGAGGTTGCGGGTTCAATCCCTGGCCTTGCTCAGT
GGATTAAGGATCTGTTGTGAGCTGTAATGTAGGTCACAGACTCGGCTTGGATCCTGCGTT
GCTGTGGCTCTGGCGTAGGCCAGTGGCTATAGCTCTGATTCGACCCCTAGCCTGGGAACC
TCCATATGCCACAGGAGCAGCTCTAGAAAAACTCAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1311-1480, - strand, RNAz p=0.999652
               

               
               1976-2108, - strand, RNAz p=0.916213

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1311-1480, - strand, RNAz p=0.999652
               

               
               1976-2108, - strand, RNAz p=0.916213

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               50-2498, gnl|bosTau2|chr9 (15933718-15936192)
               

               
               50-2498, gnl|Hg17|chr15 (49988262-49991171)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-2498, gnl|bosTau2|chr9 (15933718-15936192)
               

               
               50-2498, gnl|Hg17|chr15 (49988262-49991171)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               cbl (0.344392)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               elu (0.385356)
               

               
               eru (0.360144)
               

               
               cbl (0.344392)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               tes (0.207814)
               

               
               ton (0.1755)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eep (0.122564)
               

               
               clu (0.119646)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1311-1480, - strand, RNAz p=0.999652
	1976-2108, - strand, RNAz p=0.916213

	50-2498, gnl\|bosTau2\|chr9 (15933718-15936192)
	50-2498, gnl\|Hg17\|chr15 (49988262-49991171)

	pro (0.512033)
	elu (0.385356)
	eru (0.360144)
	cbl (0.344392)
	cst (0.280073)
	cbe (0.239234)
	tes (0.207814)
	ton (0.1755)
	spl (0.143184)
	pty (0.142714)
	csk (0.140746)
	ssp (0.13552)
	ute (0.132784)
	ova (0.129132)
	bla (0.124347)
	tra (0.123092)
	eep (0.122564)
	clu (0.119646)
	ecc (0.115035)
	cty (0.10408)
	ldo (0.0970026)