Non-Coding RNA Search

Ss1.1-rcst18_i23.5

Sequence:


               
               CAGGCGTATTCCCTGGGATTTTGAGAAAATAAAGAAAGCAAGTGAATGGCTAAGAAGAAC
TGAAGGACAGTACCCGTCAATCTGCCAGCGGCTGGAGCTGGGCAAAGACTGGGACACGGC
CACCAAACAGCTGCTGGGCATCCAGGCCTTACCCACCACCTCCCCGCTTTACAGGCTTCT
TCAGTGTAGTCAAGGCTGAATCACATCAAGTATTTTAAACTTTTTTCATGCTTCTATGTA
TCCAGTACACAGATAGTAACAGATATCTATAATGAAATCTAATTATGATTTTATTTAGTA
TAGCAATCCCTTTAAAATGAATGGGAGCCGTCTGTTGTTTTAATGTACGAACAAGCAATT
ATCAAATAAAAATTCCAGTACTACAGGATCTTTTTTTTTTTTTTTTTTTTTTTACTGCAC
CTGCAACATCCAGAAGTTCCTAGACCAGGGATCAAAACCGTGCCACAGCAGTGACGATGC
CAGGCCACCGAGGAACTCCCATTACAGACGTTTTTGGGTTTGAATGTTTTAAGGTGATGA
GAGAGACGTGTTGGCATGGTCTTGAAAGCTTATTTCCTTCTCCCCTCTCAGGGGTCTGGT
AGAGTGCTGGCCCAGCCAGACGGACCAAGCTGCGAGGAGTTAAGGACTTTGTCCATGGCC
ACATTCCTGGCTTCAAGCCTGTTTCGGGGCTCCAGGTGTCCAGCTTTGGCCCTGGCTGAG
CACACGTCCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCGTATTCCCTGGGATTTTGAGAAAATAAAGAAAGCAAGTGAATGGCTAAGAAGAAC
TGAAGGACAGTACCCGTCAATCTGCCAGCGGCTGGAGCTGGGCAAAGACTGGGACACGGC
CACCAAACAGCTGCTGGGCATCCAGGCCTTACCCACCACCTCCCCGCTTTACAGGCTTCT
TCAGTGTAGTCAAGGCTGAATCACATCAAGTATTTTAAACTTTTTTCATGCTTCTATGTA
TCCAGTACACAGATAGTAACAGATATCTATAATGAAATCTAATTATGATTTTATTTAGTA
TAGCAATCCCTTTAAAATGAATGGGAGCCGTCTGTTGTTTTAATGTACGAACAAGCAATT
ATCAAATAAAAATTCCAGTACTACAGGATCTTTTTTTTTTTTTTTTTTTTTTTACTGCAC
CTGCAACATCCAGAAGTTCCTAGACCAGGGATCAAAACCGTGCCACAGCAGTGACGATGC
CAGGCCACCGAGGAACTCCCATTACAGACGTTTTTGGGTTTGAATGTTTTAAGGTGATGA
GAGAGACGTGTTGGCATGGTCTTGAAAGCTTATTTCCTTCTCCCCTCTCAGGGGTCTGGT
AGAGTGCTGGCCCAGCCAGACGGACCAAGCTGCGAGGAGTTAAGGACTTTGTCCATGGCC
ACATTCCTGGCTTCAAGCCTGTTTCGGGGCTCCAGGTGTCCAGCTTTGGCCCTGGCTGAG
CACACGTCCTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55639573|ref|XP_509581.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55639573|ref|XP_509581.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               2-377, gnl|bosTau2|chr12 (20227703-20227327)
               

               
               2-377, gnl|canFam2|chr25 (21432370-21432037)
               

               
               2-377, gnl|echTel1|scaffold_220115 (3315-3651)
               

               
               2-377, gnl|hg17|chr13 (18879796-18880140)
               

               
               2-377, gnl|Hg17|chr13 (23893454-23893075)
               

               
               2-377, gnl|loxAfr1|scaffold_160350 (592-225)
               

               
               2-377, gnl|mm7|chr14 (51526849-51527173)
               

               
               2-377, gnl|monDom2|scaffold_15 (27157006-27157349)
               

               
               2-377, gnl|oryCun1|scaffold_179192 (60704-60361)
               

               
               2-377, gnl|panTro1|chr14 (17776870-17777221)
               

               
               2-377, gnl|rheMac2|chr17 (4989957-4990307)
               

               
               2-377, gnl|rn3|chr15 (35674412-35674749)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-377, gnl|bosTau2|chr12 (20227703-20227327)
               

               
               2-377, gnl|canFam2|chr25 (21432370-21432037)
               

               
               2-377, gnl|echTel1|scaffold_220115 (3315-3651)
               

               
               2-377, gnl|hg17|chr13 (18879796-18880140)
               

               
               2-377, gnl|Hg17|chr13 (23893454-23893075)
               

               
               2-377, gnl|loxAfr1|scaffold_160350 (592-225)
               

               
               2-377, gnl|mm7|chr14 (51526849-51527173)
               

               
               2-377, gnl|monDom2|scaffold_15 (27157006-27157349)
               

               
               2-377, gnl|oryCun1|scaffold_179192 (60704-60361)
               

               
               2-377, gnl|panTro1|chr14 (17776870-17777221)
               

               
               2-377, gnl|rheMac2|chr17 (4989957-4990307)
               

               
               2-377, gnl|rn3|chr15 (35674412-35674749)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ill (0.175593)
               

               
               cst (0.140036)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cst (0.140036)

	2-377, gnl\|bosTau2\|chr12 (20227703-20227327)
	2-377, gnl\|canFam2\|chr25 (21432370-21432037)
	2-377, gnl\|echTel1\|scaffold_220115 (3315-3651)
	2-377, gnl\|hg17\|chr13 (18879796-18880140)
	2-377, gnl\|Hg17\|chr13 (23893454-23893075)
	2-377, gnl\|loxAfr1\|scaffold_160350 (592-225)
	2-377, gnl\|mm7\|chr14 (51526849-51527173)
	2-377, gnl\|monDom2\|scaffold_15 (27157006-27157349)
	2-377, gnl\|oryCun1\|scaffold_179192 (60704-60361)
	2-377, gnl\|panTro1\|chr14 (17776870-17777221)
	2-377, gnl\|rheMac2\|chr17 (4989957-4990307)
	2-377, gnl\|rn3\|chr15 (35674412-35674749)