Ss1.1-rcst19_p19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTGTCAACTATTAAGAAAAACATTGAAAATGGACTGATCCGCAGCACAGCCGAATTTCA GCGTGACATTATGCTGATGTTCCAGAATGCTGTGATGTATAATAGCTCAGACCATGATGT CTATCACATGGCAGTAGAAATGCAACGAGATGTCTTGGAGCAGATCCAGCAATTCTTAGC CACACAGTTGATTATGCAAACATCTGAGTCTGGGATCAGTGCTAAAAGTCTTCGAGGGAG AGATTCTACCCGTAAACAGGATGCTTCAGAGAAGGACAGTGTCCCCATGGGCTCTCCTGC CTTCCTTCTCTCTCTCTTTGATGGGGGAACAAGGGGGCGCCGCTGTGCCATTGAAGCAGA TATGAAGATGAAAAAGTGAAGCCTGAGTGTCCACATTGGGCTAAACCTGAAATAGAAGTA AAGGTAGAGCTTGGGCTTGTGGGCCCAGTTCCAGAAGTGGAAGTTGCAGAAGAGGAGGTG CCTGGGCCACGTGACATGAGCTGGAGAAGTCTCTCTCAGAGAGTTGGAGTAGCACAATTG CCTGTTTTAGGGCAAAAATCACGGGCTGTGTTAATGTCCTGATGTGTTGCTAGCAGATGT AGCTAGTTTGTACTGTCTTGTGAAGTGTACAGACCTTAAAGAAAAAACCAAAACCTATGA AGTGTGTATGTACACAATAAACTCTGAAAGCAAAGAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTGTCAACTATTAAGAAAAACATTGAAAATGGACTGATCCGCAGCACAGCCGAATTTCA GCGTGACATTATGCTGATGTTCCAGAATGCTGTGATGTATAATAGCTCAGACCATGATGT CTATCACATGGCAGTAGAAATGCAACGAGATGTCTTGGAGCAGATCCAGCAATTCTTAGC CACACAGTTGATTATGCAAACATCTGAGTCTGGGATCAGTGCTAAAAGTCTTCGAGGGAG AGATTCTACCCGTAAACAGGATGCTTCAGAGAAGGACAGTGTCCCCATGGGCTCTCCTGC CTTCCTTCTCTCTCTCTTTGATGGGGGAACAAGGGGGCGCCGCTGTGCCATTGAAGCAGA TATGAAGATGAAAAAGTGAAGCCTGAGTGTCCACATTGGGCTAAACCTGAAATAGAAGTA AAGGTAGAGCTTGGGCTTGTGGGCCCAGTTCCAGAAGTGGAAGTTGCAGAAGAGGAGGTG CCTGGGCCACGTGACATGAGCTGGAGAAGTCTCTCTCAGAGAGTTGGAGTAGCACAATTG CCTGTTTTAGGGCAAAAATCACGGGCTGTGTTAATGTCCTGATGTGTTGCTAGCAGATGT AGCTAGTTTGTACTGTCTTGTGAAGTGTACAGACCTTAAAGAAAAAACCAAAACCTATGA AGTGTGTATGTACACAATAAACTCTGAAAGCAAAGAAAAAAAAAAAAA |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-169, - strand, RNAz p=0.938091 | |
| 385-542, - strand, RNAz p=0.85958 | |
| 506-623, - strand, RNAz p=0.867452 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-169, - strand, RNAz p=0.938091 | |
| 385-542, - strand, RNAz p=0.85958 | |
| 506-623, - strand, RNAz p=0.867452 |
| Aligned organism(s): 50 entry(ies) | More info |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
| 1-169, gnl|bosTau2|chr7 (34706564-34706396) | |
| 1-169, gnl|canFam2|chr11 (28811188-28811397) | |
| 1-169, gnl|canFam2|chr11 (28825800-28825950) | |
| 1-169, gnl|danRer3|chr14 (3352420-3352617) | |
| 1-169, gnl|danRer3|chr21 (20130031-20129880) | |
| 1-169, gnl|dasNov1|scaffold_11899 (44941-44792) | |
| 1-169, gnl|dasNov1|scaffold_16650 (40310-40101) | |
| 1-169, gnl|echTel1|scaffold_235560 (6143-5934) | |
| 1-169, gnl|echTel1|scaffold_320408 (110729-110579) | |
| 1-169, gnl|fr1|chrUn (129928785-129928969) | |
| 1-169, gnl|fr1|chrUn (129928824-129928970) | |
| 1-169, gnl|galGal2|chr13 (9136532-9136725) | |
| 1-169, gnl|galGal2|chr13 (9148484-9148629) | |
| 1-169, gnl|hg17|chr5 (137504288-137504497) | |
| 1-169, gnl|hg17|chr5 (137524519-137524671) | |
| 1-169, gnl|Hg17|chr5 (137524647-137524479) | |
| 1-169, gnl|loxAfr1|scaffold_2403 (29596-29387) | |
| 1-169, gnl|loxAfr1|scaffold_27834 (14111-13961) | |
| 1-169, gnl|mm7|chr18 (34956260-34956458) | |
| 1-169, gnl|mm7|chr18 (34979212-34979372) | |
| 1-169, gnl|Mm7|chr18 (34979340-34979172) | |
| 1-169, gnl|monDom2|scaffold_6 (71356695-71356486) | |
| 1-169, gnl|monDom2|scaffold_6 (71343607-71343456) | |
| 1-169, gnl|oryCun1|scaffold_201484 (56204-55995) | |
| 1-169, gnl|oryCun1|scaffold_203987 (915-1066) | |
| 1-169, gnl|panTro1|chr4 (144106454-144106663) | |
| 1-169, gnl|panTro1|chr4 (144126718-144126870) | |
| 1-169, gnl|rheMac2|chr6 (134544680-134544889) | |
| 1-169, gnl|rheMac2|chr6 (134567128-134567279) | |
| 1-169, gnl|rn3|chr18 (27078806-27079004) | |
| 1-169, gnl|rn3|chr18 (27104652-27104806) | |
| 1-169, gnl|tetNig1|chrUn_random (86099305-86099489) | |
| 1-169, gnl|tetNig1|chrUn_random (86099344-86099491) | |
| 1-169, gnl|xenTro1|scaffold_230 (1424434-1424229) | |
| 1-169, gnl|xenTro1|scaffold_230 (1424387-1424234) | |
| 315-699, gnl|bosTau2|chr7 (34702010-34701631) | |
| 315-699, gnl|canFam2|chr11 (28822016-28822339) | |
| 315-699, gnl|dasNov1|scaffold_11899 (48422-48054) | |
| 315-699, gnl|echTel1|scaffold_320408 (115604-115289) | |
| 315-699, gnl|galGal2|chr13 (9145248-9145595) | |
| 315-699, gnl|hg17|chr5 (137520476-137520794) | |
| 315-699, gnl|Hg17|chr5 (137520860-137520475) | |
| 315-699, gnl|loxAfr1|scaffold_27834 (17640-17332) | |
| 315-699, gnl|mm7|chr18 (34975290-34975647) | |
| 315-699, gnl|Mm7|chr18 (34975711-34975289) | |
| 315-699, gnl|monDom2|scaffold_6 (71347344-71347035) | |
| 315-699, gnl|oryCun1|scaffold_201484 (40856-40542) | |
| 315-699, gnl|panTro1|chr4 (144122675-144122994) | |
| 315-699, gnl|rheMac2|chr6 (134563074-134563394) | |
| 315-699, gnl|rn3|chr18 (27100880-27101230) |
| Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-169, gnl|bosTau2|chr7 (34706564-34706396) | |
| 1-169, gnl|canFam2|chr11 (28811188-28811397) | |
| 1-169, gnl|canFam2|chr11 (28825800-28825950) | |
| 1-169, gnl|danRer3|chr14 (3352420-3352617) | |
| 1-169, gnl|danRer3|chr21 (20130031-20129880) | |
| 1-169, gnl|dasNov1|scaffold_11899 (44941-44792) | |
| 1-169, gnl|dasNov1|scaffold_16650 (40310-40101) | |
| 1-169, gnl|echTel1|scaffold_235560 (6143-5934) | |
| 1-169, gnl|echTel1|scaffold_320408 (110729-110579) | |
| 1-169, gnl|fr1|chrUn (129928785-129928969) | |
| 1-169, gnl|fr1|chrUn (129928824-129928970) | |
| 1-169, gnl|galGal2|chr13 (9136532-9136725) | |
| 1-169, gnl|galGal2|chr13 (9148484-9148629) | |
| 1-169, gnl|hg17|chr5 (137504288-137504497) | |
| 1-169, gnl|hg17|chr5 (137524519-137524671) | |
| 1-169, gnl|Hg17|chr5 (137524647-137524479) | |
| 1-169, gnl|loxAfr1|scaffold_2403 (29596-29387) | |
| 1-169, gnl|loxAfr1|scaffold_27834 (14111-13961) | |
| 1-169, gnl|mm7|chr18 (34956260-34956458) | |
| 1-169, gnl|mm7|chr18 (34979212-34979372) | |
| 1-169, gnl|Mm7|chr18 (34979340-34979172) | |
| 1-169, gnl|monDom2|scaffold_6 (71356695-71356486) | |
| 1-169, gnl|monDom2|scaffold_6 (71343607-71343456) | |
| 1-169, gnl|oryCun1|scaffold_201484 (56204-55995) | |
| 1-169, gnl|oryCun1|scaffold_203987 (915-1066) | |
| 1-169, gnl|panTro1|chr4 (144106454-144106663) | |
| 1-169, gnl|panTro1|chr4 (144126718-144126870) | |
| 1-169, gnl|rheMac2|chr6 (134544680-134544889) | |
| 1-169, gnl|rheMac2|chr6 (134567128-134567279) | |
| 1-169, gnl|rn3|chr18 (27078806-27079004) | |
| 1-169, gnl|rn3|chr18 (27104652-27104806) | |
| 1-169, gnl|tetNig1|chrUn_random (86099305-86099489) | |
| 1-169, gnl|tetNig1|chrUn_random (86099344-86099491) | |
| 1-169, gnl|xenTro1|scaffold_230 (1424434-1424229) | |
| 1-169, gnl|xenTro1|scaffold_230 (1424387-1424234) | |
| 315-699, gnl|bosTau2|chr7 (34702010-34701631) | |
| 315-699, gnl|canFam2|chr11 (28822016-28822339) | |
| 315-699, gnl|dasNov1|scaffold_11899 (48422-48054) | |
| 315-699, gnl|echTel1|scaffold_320408 (115604-115289) | |
| 315-699, gnl|galGal2|chr13 (9145248-9145595) | |
| 315-699, gnl|hg17|chr5 (137520476-137520794) | |
| 315-699, gnl|Hg17|chr5 (137520860-137520475) | |
| 315-699, gnl|loxAfr1|scaffold_27834 (17640-17332) | |
| 315-699, gnl|mm7|chr18 (34975290-34975647) | |
| 315-699, gnl|Mm7|chr18 (34975711-34975289) | |
| 315-699, gnl|monDom2|scaffold_6 (71347344-71347035) | |
| 315-699, gnl|oryCun1|scaffold_201484 (40856-40542) | |
| 315-699, gnl|panTro1|chr4 (144122675-144122994) | |
| 315-699, gnl|rheMac2|chr6 (134563074-134563394) | |
| 315-699, gnl|rn3|chr18 (27100880-27101230) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| med (0.232504) | |
| jej (0.197844) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| tra (0.123092) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| med (0.232504) | |
| jej (0.197844) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| tra (0.123092) |