Non-Coding RNA Search

Ss1.1-rcst21_c7.5

Sequence:


               
               CCCAGACGTCACACTTGATCACTGACTCGGTTGCCTTTCCCCAGAAAAACTTAAGGTGTA
TCAAGGTGTCCGGGTGAAGATCACCGTGAAGGAGCTGCTGCAGCAAAGAAGGGCGCACCA
GGCAGCCTCAGGGGGAACTCTGTCCGGAGGCACCAGTGTCCACCTTGCAGATCCAGACTC
ACCATCTCCCTCAGGACTGTATTTTGAGCCTGAACCAATTCCTTCCATGCCCAATTATTT
CCAGCCCCGAGAATTCTCCAGTTGTGTTTCTTGTGAAGAAAACCCAAGCTGCCTCGACCA
GATCTTCGATTCCTACCTTCAGGCAGAGACACACCCGGACCCTTCGCTCACTTCCATGCA
AAGTACTCCCCACTGTTTCCCAGACAGCTTCCAGGCTGCCCCTTTCTGCTTCAACCAGAG
CCTGACCCCAGGATCGCCTTCGGATTCCTCCACGCTCTCCGGTTCCTTAGACTGTAGTTA
CTCTCCTGCTCAGCTCCCTGCGTGTGCTCCGGAGAATTACGGCTCTCCGCCTTCTCTGGA
CCCCAGAAACTGCGGCTACCCCTCAGAAGACTACCTGTACCCTCCCCTGCCCTTGCACGC
CCAGTACGACTGCTTCTCCACCGCCCCTGCCTCGGTCTGCTGCTGTGCATCCTGCGAGGC
CGAGCACCTGGACCCCCTCCGAGCTTCCGAGTATTTTTCCTACCCCAGCACAGACTGTGT
GACCTTCGCTCCCTCAGCGACAGCAGGCAGCGATTTCTACAAGAGGGAAACAAACTGGGA
CACCTGCTATAGTTAATAGCAAGGACATTAACTGGGAACCTTGGCATGCCTCTGGCCATT
TTTTACCATCTCTCGAGGACAACTCAAAATGTTCAGCCCGGTAACAAGATGACGCAGGCA
CAGGGGTACCTGTCACCATTTTCGATTTTCCGACACTACTTTAGGCATGAAGAGGAAGTC
CCCAGAGCCATTCCTAGTGCCACTCCTACTTTGTCTGCTTTCAGTTAAAATTCATGTAGG
GAACATACCATTGTTTTACTTTCCTGTGTAACGAACAAAGGCTAGTTTTTTTTAAACTAA
TAAATAATTTTGTATCATCAGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGACGTCACACTTGATCACTGACTCGGTTGCCTTTCCCCAGAAAAACTTAAGGTGTA
TCAAGGTGTCCGGGTGAAGATCACCGTGAAGGAGCTGCTGCAGCAAAGAAGGGCGCACCA
GGCAGCCTCAGGGGGAACTCTGTCCGGAGGCACCAGTGTCCACCTTGCAGATCCAGACTC
ACCATCTCCCTCAGGACTGTATTTTGAGCCTGAACCAATTCCTTCCATGCCCAATTATTT
CCAGCCCCGAGAATTCTCCAGTTGTGTTTCTTGTGAAGAAAACCCAAGCTGCCTCGACCA
GATCTTCGATTCCTACCTTCAGGCAGAGACACACCCGGACCCTTCGCTCACTTCCATGCA
AAGTACTCCCCACTGTTTCCCAGACAGCTTCCAGGCTGCCCCTTTCTGCTTCAACCAGAG
CCTGACCCCAGGATCGCCTTCGGATTCCTCCACGCTCTCCGGTTCCTTAGACTGTAGTTA
CTCTCCTGCTCAGCTCCCTGCGTGTGCTCCGGAGAATTACGGCTCTCCGCCTTCTCTGGA
CCCCAGAAACTGCGGCTACCCCTCAGAAGACTACCTGTACCCTCCCCTGCCCTTGCACGC
CCAGTACGACTGCTTCTCCACCGCCCCTGCCTCGGTCTGCTGCTGTGCATCCTGCGAGGC
CGAGCACCTGGACCCCCTCCGAGCTTCCGAGTATTTTTCCTACCCCAGCACAGACTGTGT
GACCTTCGCTCCCTCAGCGACAGCAGGCAGCGATTTCTACAAGAGGGAAACAAACTGGGA
CACCTGCTATAGTTAATAGCAAGGACATTAACTGGGAACCTTGGCATGCCTCTGGCCATT
TTTTACCATCTCTCGAGGACAACTCAAAATGTTCAGCCCGGTAACAAGATGACGCAGGCA
CAGGGGTACCTGTCACCATTTTCGATTTTCCGACACTACTTTAGGCATGAAGAGGAAGTC
CCCAGAGCCATTCCTAGTGCCACTCCTACTTTGTCTGCTTTCAGTTAAAATTCATGTAGG
GAACATACCATTGTTTTACTTTCCTGTGTAACGAACAAAGGCTAGTTTTTTTTAAACTAA
TAAATAATTTTGTATCATCAGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47224909|emb|CAG06479.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47224909|emb|CAG06479.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-138, gnl|bosTau2|chr7 (38338901-38338766)
               

               
               3-138, gnl|Hg17|chr11 (110676420-110676555)
               

               
               3-138, gnl|Mm7|chr9 (51256314-51256179)
               


               
               424-1095, gnl|bosTau2|chr7 (38331509-38330830)
               

               
               424-1095, gnl|Hg17|chr11 (110684003-110684664)
               

               
               424-1095, gnl|Mm7|chr9 (51249508-51248845)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-138, gnl|bosTau2|chr7 (38338901-38338766)
               

               
               3-138, gnl|Hg17|chr11 (110676420-110676555)
               

               
               3-138, gnl|Mm7|chr9 (51256314-51256179)
               


               
               424-1095, gnl|bosTau2|chr7 (38331509-38330830)
               

               
               424-1095, gnl|Hg17|chr11 (110684003-110684664)
               

               
               424-1095, gnl|Mm7|chr9 (51249508-51248845)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cki (0.165235)
               

               
               cst (0.140036)
               

               
               med (0.116252)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.165235)
               

               
               cst (0.140036)
               

               
               med (0.116252)

	3-138, gnl\|bosTau2\|chr7 (38338901-38338766)
	3-138, gnl\|Hg17\|chr11 (110676420-110676555)
	3-138, gnl\|Mm7\|chr9 (51256314-51256179)

	424-1095, gnl\|bosTau2\|chr7 (38331509-38330830)
	424-1095, gnl\|Hg17\|chr11 (110684003-110684664)
	424-1095, gnl\|Mm7\|chr9 (51249508-51248845)