Non-Coding RNA Search

Ss1.1-rcst21_e6.5

Sequence:


               
               ACTATTCATACTTTGATGGGATCCTGGGAATGGCCTACCCCAACATGGCAGTGGGGAATA
GCCCAACAGTCATGCAGAGCATGCTGCAGCAGGACCAGCTCACCCAACCCATCTTCAGCT
TCTACTTCTCTCGCCAACCAACCTATGAGTATGGTGGAGAGCTCATCCTGGGCGGTGTGG
ACACCCAGCTTTATTCTGGTCAGATCGTCTGGACCCCTGTCACCCGGGAACTGTACTGGC
AGATTGCCATCCAGGAGTTTGCCATCGGTGACCAGGCCACTGGCTGGTGCTTCTCCCAGG
GCTGCCAAGCCATTGTGGATACAGGGACCTTCCTGCTGGCTGTTCCCCAGCAGTACCTGG
CCTCCTTCCTGCAGGCAACAGGAGCCCAGGAGGCTCAGAATGGTGATTTTGTGGTCGACT
GCGACTTGGTGCAGAGCATGCCCACCATCACCTTCATCATCGGCGGGTCCCAGTTCCCTC
TGCCTCCCTCTGCCTACGTCTTCAGTAACAATGACTCCTGCAGGCTCGGGATTGAGGCCT
CTTACCTGCCCTCCTCCAGCGGGGAGCCCCTGTGGATTCTGGGGGATGTCTTCCTCAAGG
AGTATTACTCTGTCTACGACATGGCCAACAACCGGGTGGGCTTTGCCCTCTCCGCCTAGA
CGAGCGCCTCGTCTCCACCCTCCCCGAGGACTCTGAGGTTGCCCTAATGTCTCTGTAGAT
GACGGCAGTATTTTAAACTGTCCTGATTCCTCCTGCTCACAAGAGTCTTTCTTCCTGAAC
TTAATAAATTCAGAAATCTTCAGACATCTTTGAGGCTCCTTCCAATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTATTCATACTTTGATGGGATCCTGGGAATGGCCTACCCCAACATGGCAGTGGGGAATA
GCCCAACAGTCATGCAGAGCATGCTGCAGCAGGACCAGCTCACCCAACCCATCTTCAGCT
TCTACTTCTCTCGCCAACCAACCTATGAGTATGGTGGAGAGCTCATCCTGGGCGGTGTGG
ACACCCAGCTTTATTCTGGTCAGATCGTCTGGACCCCTGTCACCCGGGAACTGTACTGGC
AGATTGCCATCCAGGAGTTTGCCATCGGTGACCAGGCCACTGGCTGGTGCTTCTCCCAGG
GCTGCCAAGCCATTGTGGATACAGGGACCTTCCTGCTGGCTGTTCCCCAGCAGTACCTGG
CCTCCTTCCTGCAGGCAACAGGAGCCCAGGAGGCTCAGAATGGTGATTTTGTGGTCGACT
GCGACTTGGTGCAGAGCATGCCCACCATCACCTTCATCATCGGCGGGTCCCAGTTCCCTC
TGCCTCCCTCTGCCTACGTCTTCAGTAACAATGACTCCTGCAGGCTCGGGATTGAGGCCT
CTTACCTGCCCTCCTCCAGCGGGGAGCCCCTGTGGATTCTGGGGGATGTCTTCCTCAAGG
AGTATTACTCTGTCTACGACATGGCCAACAACCGGGTGGGCTTTGCCCTCTCCGCCTAGA
CGAGCGCCTCGTCTCCACCCTCCCCGAGGACTCTGAGGTTGCCCTAATGTCTCTGTAGAT
GACGGCAGTATTTTAAACTGTCCTGATTCCTCCTGCTCACAAGAGTCTTTCTTCCTGAAC
TTAATAAATTCAGAAATCTTCAGACATCTTTGAGGCTCCTTCCAATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51534970|dbj|BAD36918.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51534970|dbj|BAD36918.1|

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-144, gnl|bosTau2|chr3 (27873152-27873295)
               

               
               1-144, gnl|Hg17|chr1 (111643050-111642907)
               

               
               1-144, gnl|Mm7|chr17 (45867206-45867348)
               


               
               257-407, gnl|bosTau2|chr3 (27876797-27876943)
               

               
               257-407, gnl|Hg17|chr1 (111639259-111639113)
               

               
               257-407, gnl|Mm7|chr17 (45869512-45869651)
               


               
               263-403, gnl|bosTau2|chr23 (15272599-15272462)
               

               
               263-403, gnl|Hg17|chr6 (41815656-41815519)
               

               
               263-403, gnl|Mm7|chr17 (45869507-45869647)
               


               
               499-828, gnl|bosTau2|chr3 (27878118-27878449)
               

               
               499-828, gnl|Hg17|chr1 (111637836-111637502)
               

               
               499-828, gnl|Mm7|chr3 (105811672-105811952)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-144, gnl|bosTau2|chr3 (27873152-27873295)
               

               
               1-144, gnl|Hg17|chr1 (111643050-111642907)
               

               
               1-144, gnl|Mm7|chr17 (45867206-45867348)
               


               
               257-407, gnl|bosTau2|chr3 (27876797-27876943)
               

               
               257-407, gnl|Hg17|chr1 (111639259-111639113)
               

               
               257-407, gnl|Mm7|chr17 (45869512-45869651)
               


               
               263-403, gnl|bosTau2|chr23 (15272599-15272462)
               

               
               263-403, gnl|Hg17|chr6 (41815656-41815519)
               

               
               263-403, gnl|Mm7|chr17 (45869507-45869647)
               


               
               499-828, gnl|bosTau2|chr3 (27878118-27878449)
               

               
               499-828, gnl|Hg17|chr1 (111637836-111637502)
               

               
               499-828, gnl|Mm7|chr3 (105811672-105811952)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cst (1.96051)
               

               
               sto (0.899119)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (1.96051)
               

               
               sto (0.899119)

	1-144, gnl\|bosTau2\|chr3 (27873152-27873295)
	1-144, gnl\|Hg17\|chr1 (111643050-111642907)
	1-144, gnl\|Mm7\|chr17 (45867206-45867348)

	257-407, gnl\|bosTau2\|chr3 (27876797-27876943)
	257-407, gnl\|Hg17\|chr1 (111639259-111639113)
	257-407, gnl\|Mm7\|chr17 (45869512-45869651)

	263-403, gnl\|bosTau2\|chr23 (15272599-15272462)
	263-403, gnl\|Hg17\|chr6 (41815656-41815519)
	263-403, gnl\|Mm7\|chr17 (45869507-45869647)

	499-828, gnl\|bosTau2\|chr3 (27878118-27878449)
	499-828, gnl\|Hg17\|chr1 (111637836-111637502)
	499-828, gnl\|Mm7\|chr3 (105811672-105811952)