Ss1.1-rcst21_l12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTCACTTCTCTGCTGCGGCCAGATGGGCATGGGCATCATGAAGTGGATGGTGGTGGCCTT GGTCTGCCTCCAACTCTTGGAGGCGTCGGTTATCAAAGTCCCGCTGAAGAAATTAAAGTC CATCCGTCAGGCCATGAAGGAGAAGGGCCTGCTGGAGGAGTTCCTCAAGACCCACAAGTA CGACCCCGCCCAGAGGTACCGCTTCGGCGACTTCAGCGTGGCCTTGGAGCCCATGGCCTA CTTGGAAGCTGCCTACTTTGGCGAGATCAGCATCGGGACCCCACCACAGAACTTCCTGGT CCTTTTTGACACCGGCTCCTCCAATCTGTGGGTGCCCTCTGTCTACTGCAAGAGCCTGGC CTGCACCACCCATGCCCGCTTCAACCCCAGCAAGTCCTCTACCTACTCCACCGACAGGCA GACCTTCTCCCTGCAGTACGGCAGTGGCAGCCTCACTGGCTTCTTCGGTTACGACACCCT AAAGATCCAGAGCATCCAGGTCCCCGACCAGGAGTTCGGCCTGAGTGAGACAGAGCCAGG TACCAGTTTCCTGTATGCCCAGTTCGATGGCATCATGGGCCTGGCCTACCCCGACCTGTC TGCGGGTGGGGCCACCACTGCCATGCAGGGCCTCCTGCAGGAGGATGCGCTCACCAGCCC AGTCTTCAGCTTCTACCTCAGCAACCAGCAGAGCTCTCAGGACGGGGGAGAACTCGTCTT GGGGGGTGTGGACAGCAGCCTGTACACCGGTCAGATCTACTGGGCCCCCGTCACTCAGGA GCTATACTGGCAGATTGGCATCGAGGAGTTCCTCATTGGTGACGAGGCCTCTGGCTGGTG CTCTGAGGGCTGCCAGGCCATTGTGGACACCGGCACGTCTCTGCTCACCGTGCCCCAGGA CTACCTGAGTGACCTCGTGCAGGCCACGGGGGCCGAGGAAAACGAGTATGGAGAGTTTCT CGTGGACTGTAAAGACATCCAGAGCCTGCCCACCTTCACCTTCATCATCAATGGTGTGGA GTTCCCTCTGCCACCCTCCGCCTACATCCTCGAGGAGGACGGCTTCTGCATGGTGGGGGT CGAGCCCACCTACGTGTCCTCCCAGAATGGCCAGCCCCTGTGGATCCTCGGGGACGTCTT CCTCAGGTCCTACTATTCCGTCTTCGACCTGGGCAACAACAGGGTGGGCTTCGCCACCGC TGCCTAGACTCAGCCCCTGGACACCTGGGTCCCCTTTTCCTTCTCGGCACCCCACCCTAC AGGGGGTTCTCTCTGCACTTCCTTACTGCATTCAGCCTTCCTTCTCTGGACTCTGGACTT GCTCTAACAATAAATCATTCTTCTCCATGCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTCACTTCTCTGCTGCGGCCAGATGGGCATGGGCATCATGAAGTGGATGGTGGTGGCCTT GGTCTGCCTCCAACTCTTGGAGGCGTCGGTTATCAAAGTCCCGCTGAAGAAATTAAAGTC CATCCGTCAGGCCATGAAGGAGAAGGGCCTGCTGGAGGAGTTCCTCAAGACCCACAAGTA CGACCCCGCCCAGAGGTACCGCTTCGGCGACTTCAGCGTGGCCTTGGAGCCCATGGCCTA CTTGGAAGCTGCCTACTTTGGCGAGATCAGCATCGGGACCCCACCACAGAACTTCCTGGT CCTTTTTGACACCGGCTCCTCCAATCTGTGGGTGCCCTCTGTCTACTGCAAGAGCCTGGC CTGCACCACCCATGCCCGCTTCAACCCCAGCAAGTCCTCTACCTACTCCACCGACAGGCA GACCTTCTCCCTGCAGTACGGCAGTGGCAGCCTCACTGGCTTCTTCGGTTACGACACCCT AAAGATCCAGAGCATCCAGGTCCCCGACCAGGAGTTCGGCCTGAGTGAGACAGAGCCAGG TACCAGTTTCCTGTATGCCCAGTTCGATGGCATCATGGGCCTGGCCTACCCCGACCTGTC TGCGGGTGGGGCCACCACTGCCATGCAGGGCCTCCTGCAGGAGGATGCGCTCACCAGCCC AGTCTTCAGCTTCTACCTCAGCAACCAGCAGAGCTCTCAGGACGGGGGAGAACTCGTCTT GGGGGGTGTGGACAGCAGCCTGTACACCGGTCAGATCTACTGGGCCCCCGTCACTCAGGA GCTATACTGGCAGATTGGCATCGAGGAGTTCCTCATTGGTGACGAGGCCTCTGGCTGGTG CTCTGAGGGCTGCCAGGCCATTGTGGACACCGGCACGTCTCTGCTCACCGTGCCCCAGGA CTACCTGAGTGACCTCGTGCAGGCCACGGGGGCCGAGGAAAACGAGTATGGAGAGTTTCT CGTGGACTGTAAAGACATCCAGAGCCTGCCCACCTTCACCTTCATCATCAATGGTGTGGA GTTCCCTCTGCCACCCTCCGCCTACATCCTCGAGGAGGACGGCTTCTGCATGGTGGGGGT CGAGCCCACCTACGTGTCCTCCCAGAATGGCCAGCCCCTGTGGATCCTCGGGGACGTCTT CCTCAGGTCCTACTATTCCGTCTTCGACCTGGGCAACAACAGGGTGGGCTTCGCCACCGC TGCCTAGACTCAGCCCCTGGACACCTGGGTCCCCTTTTCCTTCTCGGCACCCCACCCTAC AGGGGGTTCTCTCTGCACTTCCTTACTGCATTCAGCCTTCCTTCTCTGGACTCTGGACTT GCTCTAACAATAAATCATTCTTCTCCATGCAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 94-246, gnl|bosTau2|chr23 (15277758-15277606) | |
| 94-246, gnl|canFam2|chr12 (13435390-13435537) | |
| 94-246, gnl|dasNov1|scaffold_81629 (5007-4859) | |
| 94-246, gnl|echTel1|scaffold_310249 (131131-131280) | |
| 94-246, gnl|galGal2|chr26 (3424037-3424194) | |
| 94-246, gnl|hg17|chr6 (41820363-41820512) | |
| 94-246, gnl|Hg17|chr6 (41820527-41820375) | |
| 94-246, gnl|loxAfr1|scaffold_14670 (8406-8549) | |
| 94-246, gnl|mm7|chr17 (45865454-45865296) | |
| 94-246, gnl|Mm7|chr17 (45865279-45865440) | |
| 94-246, gnl|monDom2|scaffold_42 (1247573-1247410) | |
| 94-246, gnl|oryCun1|scaffold_206109 (13933-14082) | |
| 94-246, gnl|panTro1|chr5 (42394809-42394958) | |
| 94-246, gnl|rheMac2|chr19 (56539350-56539470) | |
| 94-246, gnl|rn3|chr9 (8729096-8729254) | |
| 94-246, gnl|xenTro1|scaffold_19 (1446726-1446573) | |
| 248-365, gnl|bosTau2|chr23 (15277122-15277005) | |
| 248-365, gnl|canFam2|chr12 (13434974-13435110) | |
| 248-365, gnl|dasNov1|scaffold_14997 (5912-5784) | |
| 248-365, gnl|echTel1|scaffold_310249 (129277-129412) | |
| 248-365, gnl|fr1|chrUn (23926519-23926654) | |
| 248-365, gnl|galGal2|chr26 (3423718-3423853) | |
| 248-365, gnl|hg17|chr6 (41820106-41820241) | |
| 248-365, gnl|Hg17|chr6 (41820230-41820113) | |
| 248-365, gnl|loxAfr1|scaffold_14670 (7905-8040) | |
| 248-365, gnl|mm7|chr17 (45865918-45865781) | |
| 248-365, gnl|Mm7|chr17 (45865792-45865909) | |
| 248-365, gnl|monDom2|scaffold_42 (1251295-1251164) | |
| 248-365, gnl|oryCun1|scaffold_210069 (11673-11536) | |
| 248-365, gnl|panTro1|chr5 (42394552-42394687) | |
| 248-365, gnl|rheMac2|chr19 (56539145-56539280) | |
| 248-365, gnl|rn3|chr9 (8728636-8728773) | |
| 248-365, gnl|tetNig1|chrUn_random (80117764-80117630) | |
| 248-365, gnl|xenTro1|scaffold_19 (1446917-1446782) | |
| 477-683, gnl|bosTau2|chr23 (15275047-15274841) | |
| 477-683, gnl|Hg17|chr6 (41818213-41818007) | |
| 477-683, gnl|Mm7|chr17 (45867134-45867337) | |
| 808-955, gnl|bosTau2|chr23 (15272605-15272458) | |
| 808-955, gnl|Hg17|chr6 (41815662-41815515) | |
| 808-955, gnl|Mm7|chr17 (45869501-45869651) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 94-246, gnl|bosTau2|chr23 (15277758-15277606) | |
| 94-246, gnl|canFam2|chr12 (13435390-13435537) | |
| 94-246, gnl|dasNov1|scaffold_81629 (5007-4859) | |
| 94-246, gnl|echTel1|scaffold_310249 (131131-131280) | |
| 94-246, gnl|galGal2|chr26 (3424037-3424194) | |
| 94-246, gnl|hg17|chr6 (41820363-41820512) | |
| 94-246, gnl|Hg17|chr6 (41820527-41820375) | |
| 94-246, gnl|loxAfr1|scaffold_14670 (8406-8549) | |
| 94-246, gnl|mm7|chr17 (45865454-45865296) | |
| 94-246, gnl|Mm7|chr17 (45865279-45865440) | |
| 94-246, gnl|monDom2|scaffold_42 (1247573-1247410) | |
| 94-246, gnl|oryCun1|scaffold_206109 (13933-14082) | |
| 94-246, gnl|panTro1|chr5 (42394809-42394958) | |
| 94-246, gnl|rheMac2|chr19 (56539350-56539470) | |
| 94-246, gnl|rn3|chr9 (8729096-8729254) | |
| 94-246, gnl|xenTro1|scaffold_19 (1446726-1446573) | |
| 248-365, gnl|bosTau2|chr23 (15277122-15277005) | |
| 248-365, gnl|canFam2|chr12 (13434974-13435110) | |
| 248-365, gnl|dasNov1|scaffold_14997 (5912-5784) | |
| 248-365, gnl|echTel1|scaffold_310249 (129277-129412) | |
| 248-365, gnl|fr1|chrUn (23926519-23926654) | |
| 248-365, gnl|galGal2|chr26 (3423718-3423853) | |
| 248-365, gnl|hg17|chr6 (41820106-41820241) | |
| 248-365, gnl|Hg17|chr6 (41820230-41820113) | |
| 248-365, gnl|loxAfr1|scaffold_14670 (7905-8040) | |
| 248-365, gnl|mm7|chr17 (45865918-45865781) | |
| 248-365, gnl|Mm7|chr17 (45865792-45865909) | |
| 248-365, gnl|monDom2|scaffold_42 (1251295-1251164) | |
| 248-365, gnl|oryCun1|scaffold_210069 (11673-11536) | |
| 248-365, gnl|panTro1|chr5 (42394552-42394687) | |
| 248-365, gnl|rheMac2|chr19 (56539145-56539280) | |
| 248-365, gnl|rn3|chr9 (8728636-8728773) | |
| 248-365, gnl|tetNig1|chrUn_random (80117764-80117630) | |
| 248-365, gnl|xenTro1|scaffold_19 (1446917-1446782) | |
| 477-683, gnl|bosTau2|chr23 (15275047-15274841) | |
| 477-683, gnl|Hg17|chr6 (41818213-41818007) | |
| 477-683, gnl|Mm7|chr17 (45867134-45867337) | |
| 808-955, gnl|bosTau2|chr23 (15272605-15272458) | |
| 808-955, gnl|Hg17|chr6 (41815662-41815515) | |
| 808-955, gnl|Mm7|chr17 (45869501-45869651) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cst (99.7059) | |
| sto (5.93418) | |
| elu (0.385356) | |
| cje (0.165235) | |
| cki (0.165235) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (99.7059) | |
| sto (5.93418) | |
| elu (0.385356) | |
| cje (0.165235) | |
| cki (0.165235) |