Non-Coding RNA Search

Ss1.1-rcst24_j12.5

Sequence:


               
               CCAGTGGGGTTGCGGCTGTGGTGTCTTGAGCGTGTCGCCCCGGTCGTCGCCATGGTGAAA
CTGAGCAAAGAGGCCAAGCAGAGGCTGCAGCAGCTTTTCAAGGGGGGCCAGTTTGCTATC
CGCTGGGGCTTCATTCCTCTCGTCATTTACTTGGGATTTAAGAGGGGTGCAGATCCTGGA
ATGCCTGAACCAACTGTTTTGAGCTTACTTTGGGGATAAAGGACTATTTGGTCATCTGGT
TTTGGAAGCAGTCACTGCAGAGGAACAACATGGAAGGTGTGCATTCTGGCTGGGATAAGA
GATGAGACATCGTTCAGACGTTCACCAGTTGGATGGCACAGGGCTCTTACTTCTCAGATG
CATCTCTGGCAGAGTGGAACCTCTATTGACTTATTTATGATAGACTGTATTAAAATAAAT
GTTTTTAACAATGTTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTGGGGTTGCGGCTGTGGTGTCTTGAGCGTGTCGCCCCGGTCGTCGCCATGGTGAAA
CTGAGCAAAGAGGCCAAGCAGAGGCTGCAGCAGCTTTTCAAGGGGGGCCAGTTTGCTATC
CGCTGGGGCTTCATTCCTCTCGTCATTTACTTGGGATTTAAGAGGGGTGCAGATCCTGGA
ATGCCTGAACCAACTGTTTTGAGCTTACTTTGGGGATAAAGGACTATTTGGTCATCTGGT
TTTGGAAGCAGTCACTGCAGAGGAACAACATGGAAGGTGTGCATTCTGGCTGGGATAAGA
GATGAGACATCGTTCAGACGTTCACCAGTTGGATGGCACAGGGCTCTTACTTCTCAGATG
CATCTCTGGCAGAGTGGAACCTCTATTGACTTATTTATGATAGACTGTATTAAAATAAAT
GTTTTTAACAATGTTAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7688665|gb|AAF67473.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7688665|gb|AAF67473.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               10-223, gnl|bosTau2|chr9 (52770810-52771021)
               

               
               10-223, gnl|Hg17|chr5 (31959187-31959401)
               

               
               10-223, gnl|Mm7|chr7 (116546522-116546703)
               


               
               94-206, gnl|bosTau2|chr7 (53229037-53228925)
               

               
               94-206, gnl|Hg17|chr5 (31959272-31959384)
               

               
               94-206, gnl|Mm7|chr7 (116546574-116546686)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-223, gnl|bosTau2|chr9 (52770810-52771021)
               

               
               10-223, gnl|Hg17|chr5 (31959187-31959401)
               

               
               10-223, gnl|Mm7|chr7 (116546522-116546703)
               


               
               94-206, gnl|bosTau2|chr7 (53229037-53228925)
               

               
               94-206, gnl|Hg17|chr5 (31959272-31959384)
               

               
               94-206, gnl|Mm7|chr7 (116546574-116546686)

Expressed library(ies): 42 entry(ies)

More info

Expressed library(ies): 42 entry(ies)

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               che (3.54417)
               

               
               cki (3.13946)
               

               
               cst (2.66069)
               

               
               cmu (2.42311)
               

               
               cje (1.81758)
               

               
               cut (1.35939)
               

               
               cbe (0.956938)
               

               
               sag (0.913576)
               

               
               sto (0.899119)
               

               
               cte (0.87822)
               

               
               nms (0.855432)
               

               
               csk (0.70373)
               

               
               mas (0.42061)
               

               
               nlu (0.383362)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (3.54417)
               

               
               cki (3.13946)
               

               
               cst (2.66069)
               

               
               cmu (2.42311)
               

               
               cje (1.81758)
               

               
               cut (1.35939)
               

               
               cbe (0.956938)
               

               
               sag (0.913576)
               

               
               sto (0.899119)
               

               
               cte (0.87822)
               

               
               nms (0.855432)
               

               
               csk (0.70373)
               

               
               mas (0.42061)
               

               
               nlu (0.383362)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               fce (0.271592)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               cli (0.152812)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	10-223, gnl\|bosTau2\|chr9 (52770810-52771021)
	10-223, gnl\|Hg17\|chr5 (31959187-31959401)
	10-223, gnl\|Mm7\|chr7 (116546522-116546703)

	94-206, gnl\|bosTau2\|chr7 (53229037-53228925)
	94-206, gnl\|Hg17\|chr5 (31959272-31959384)
	94-206, gnl\|Mm7\|chr7 (116546574-116546686)

	che (3.54417)
	cki (3.13946)
	cst (2.66069)
	cmu (2.42311)
	cje (1.81758)
	cut (1.35939)
	cbe (0.956938)
	sag (0.913576)
	sto (0.899119)
	cte (0.87822)
	nms (0.855432)
	csk (0.70373)
	mas (0.42061)
	nlu (0.383362)
	fco (0.314416)
	sme (0.305437)
	bfe (0.299715)
	fce (0.271592)
	ece (0.229305)
	jca (0.22792)
	fli (0.202881)
	fcc (0.197785)
	aor (0.195274)
	col (0.195008)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	nje (0.16592)
	cli (0.152812)
	eli (0.151814)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	nca (0.136874)
	kid (0.129735)
	thg (0.126791)
	eep (0.122564)
	pgl (0.118483)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)
	eje (0.0988338)