Ss1.1-rcst31_c15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCGAGAGGTGGATCGTCACTGGTACTTCTACCGGCACCGCAGCTGCCCACCCCCCGTC TTTATGGCCTCAGTCACCCTCGCCCAGATCATCGTGTTCCTGTGCTATGGGGCCCGACTC AACAAGTGGGTGCTGCAGACCTACCACCCAGAGTACATGAAGAGCCCCCTCGTATACCAC CCCGGCCACCGCGCCCGTGCCTGGCGCTTCCTCACCTACATGTTCATGCACGTGGGGCTG GAGCAACTGGGGTTCAACGCGCTCCTGCAGCTGATGATCGGGGTGCCCCTGGAGATGGTG CACGGCCTGCTCCGCATCAGCCTGCTCTACCTGGCTGGTGTGCTGGCAGGCTCCCTGACT GTCTCCATTACTGATATGCGGGCCCCTGTGGTGGGGGGCTCCGGCGGGGTCTACGCCCTG TGCTCTGCACACCTGGCCAATGTCGTCATGAACTGGGCTGGGATGCGGTGTCCCTACAAG CTGCTGAGGATGGTGCTGGCCCTGGTGTGCATGAGCTCCGAGGTGGGCCGGGCCGTATGG CTGCGTTTCTCCCCACCACTGCCTGCCTCCGGCCCACAGCCCAGCTTCATGGCGCACCTG GCGGGCGCGGTGGTGGGTGTCAGCATGGGCCTGACCATCCTGCGCAGCTACGAGGAGCGC CTTCGAGACCAGTGTGGCTGGTGGGTGGTGCTGCTTGCCTATGGCACTTTCCTGCTCTTC GCCATCTTCTGGAACGTCTTTGCCTACGACCTGCTGGGGGCCCACATCCCCCCCCCACCA TGACAGGACCCCCAGGGCCACGTCGGCCAGGGTGCAGCATCCACGGGCCAGCCACCCGGC AGGCCTGCATGTCCACCCTCTGTGAATGTACATCCCGAGGCTGCTGCTTCCCTGTGGGGG CAGGTGGCCCCTGTGGCCCGTGGAGTCCAGATCAAGCCTTACACCAGCCCTAGCTGCCCC CTCCCAGGCCTGGGAGGGTAGGACTGCTGGGCCGCGCCAGGTGGTAGAGGTCCCCAAGGG TGACCTCAGAGGAGACCCTACCCCGGCCTCTTCCCCAAGACTTGCAGTCTGAGCCTTTTT GGAGAATGAATAAATATTTTACAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCGAGAGGTGGATCGTCACTGGTACTTCTACCGGCACCGCAGCTGCCCACCCCCCGTC TTTATGGCCTCAGTCACCCTCGCCCAGATCATCGTGTTCCTGTGCTATGGGGCCCGACTC AACAAGTGGGTGCTGCAGACCTACCACCCAGAGTACATGAAGAGCCCCCTCGTATACCAC CCCGGCCACCGCGCCCGTGCCTGGCGCTTCCTCACCTACATGTTCATGCACGTGGGGCTG GAGCAACTGGGGTTCAACGCGCTCCTGCAGCTGATGATCGGGGTGCCCCTGGAGATGGTG CACGGCCTGCTCCGCATCAGCCTGCTCTACCTGGCTGGTGTGCTGGCAGGCTCCCTGACT GTCTCCATTACTGATATGCGGGCCCCTGTGGTGGGGGGCTCCGGCGGGGTCTACGCCCTG TGCTCTGCACACCTGGCCAATGTCGTCATGAACTGGGCTGGGATGCGGTGTCCCTACAAG CTGCTGAGGATGGTGCTGGCCCTGGTGTGCATGAGCTCCGAGGTGGGCCGGGCCGTATGG CTGCGTTTCTCCCCACCACTGCCTGCCTCCGGCCCACAGCCCAGCTTCATGGCGCACCTG GCGGGCGCGGTGGTGGGTGTCAGCATGGGCCTGACCATCCTGCGCAGCTACGAGGAGCGC CTTCGAGACCAGTGTGGCTGGTGGGTGGTGCTGCTTGCCTATGGCACTTTCCTGCTCTTC GCCATCTTCTGGAACGTCTTTGCCTACGACCTGCTGGGGGCCCACATCCCCCCCCCACCA TGACAGGACCCCCAGGGCCACGTCGGCCAGGGTGCAGCATCCACGGGCCAGCCACCCGGC AGGCCTGCATGTCCACCCTCTGTGAATGTACATCCCGAGGCTGCTGCTTCCCTGTGGGGG CAGGTGGCCCCTGTGGCCCGTGGAGTCCAGATCAAGCCTTACACCAGCCCTAGCTGCCCC CTCCCAGGCCTGGGAGGGTAGGACTGCTGGGCCGCGCCAGGTGGTAGAGGTCCCCAAGGG TGACCTCAGAGGAGACCCTACCCCGGCCTCTTCCCCAAGACTTGCAGTCTGAGCCTTTTT GGAGAATGAATAAATATTTTACAC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 83-237, gnl|bosTau2|chr25 (1220726-1220572) | |
| 83-237, gnl|canFam2|chr6 (42939392-42939235) | |
| 83-237, gnl|danRer3|chrNA (20581669-20581826) | |
| 83-237, gnl|dasNov1|scaffold_189080 (3804-3647) | |
| 83-237, gnl|echTel1|scaffold_230733 (3670-3513) | |
| 83-237, gnl|fr1|chrUn (101964041-101963884) | |
| 83-237, gnl|galGal2|chrUn (12688791-12688948) | |
| 83-237, gnl|hg17|chr16 (666969-667126) | |
| 83-237, gnl|Hg17|chr16 (666967-667121) | |
| 83-237, gnl|loxAfr1|scaffold_24134 (3166-3323) | |
| 83-237, gnl|mm7|chr17 (24019138-24018981) | |
| 83-237, gnl|Mm7|chr17 (24019138-24018984) | |
| 83-237, gnl|monDom2|scaffold_49 (9753470-9753627) | |
| 83-237, gnl|oryCun1|scaffold_208012 (54847-55004) | |
| 83-237, gnl|panTro1|chr18 (707304-707461) | |
| 83-237, gnl|rheMac2|chr20 (669056-669213) | |
| 83-237, gnl|rn3|chr10 (15101356-15101199) | |
| 83-237, gnl|tetNig1|chr2 (4748524-4748367) | |
| 83-237, gnl|xenTro1|scaffold_142 (4475-4632) | |
| 347-458, gnl|bosTau2|chr25 (1220266-1220153) | |
| 347-458, gnl|Hg17|chr16 (667457-667570) | |
| 347-458, gnl|Mm7|chr17 (24018618-24018507) | |
| 508-757, gnl|bosTau2|chr19 (12481010-12481260) | |
| 508-757, gnl|Hg17|chr17 (27672085-27672335) | |
| 508-757, gnl|Mm7|chr11 (80434982-80435232) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 83-237, gnl|bosTau2|chr25 (1220726-1220572) | |
| 83-237, gnl|canFam2|chr6 (42939392-42939235) | |
| 83-237, gnl|danRer3|chrNA (20581669-20581826) | |
| 83-237, gnl|dasNov1|scaffold_189080 (3804-3647) | |
| 83-237, gnl|echTel1|scaffold_230733 (3670-3513) | |
| 83-237, gnl|fr1|chrUn (101964041-101963884) | |
| 83-237, gnl|galGal2|chrUn (12688791-12688948) | |
| 83-237, gnl|hg17|chr16 (666969-667126) | |
| 83-237, gnl|Hg17|chr16 (666967-667121) | |
| 83-237, gnl|loxAfr1|scaffold_24134 (3166-3323) | |
| 83-237, gnl|mm7|chr17 (24019138-24018981) | |
| 83-237, gnl|Mm7|chr17 (24019138-24018984) | |
| 83-237, gnl|monDom2|scaffold_49 (9753470-9753627) | |
| 83-237, gnl|oryCun1|scaffold_208012 (54847-55004) | |
| 83-237, gnl|panTro1|chr18 (707304-707461) | |
| 83-237, gnl|rheMac2|chr20 (669056-669213) | |
| 83-237, gnl|rn3|chr10 (15101356-15101199) | |
| 83-237, gnl|tetNig1|chr2 (4748524-4748367) | |
| 83-237, gnl|xenTro1|scaffold_142 (4475-4632) | |
| 347-458, gnl|bosTau2|chr25 (1220266-1220153) | |
| 347-458, gnl|Hg17|chr16 (667457-667570) | |
| 347-458, gnl|Mm7|chr17 (24018618-24018507) | |
| 508-757, gnl|bosTau2|chr19 (12481010-12481260) | |
| 508-757, gnl|Hg17|chr17 (27672085-27672335) | |
| 508-757, gnl|Mm7|chr11 (80434982-80435232) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| cga (0.279096) | |
| ece (0.229305) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| cst (0.140036) | |
| eru (0.120048) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| ece (0.229305) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| mcp (0.170648) | |
| csp (0.161186) | |
| cst (0.140036) | |
| eru (0.120048) |