Non-Coding RNA Search

Ss1.1-rcst31_m22.5

Sequence:


               
               CCACGACACATCAAGCAGTTTCCAGGCTCGGGCCCAGCCCTCGGAGCTGACCCAGGCAGG
GGCCCCACTGGTTCCAGAGGATGCGGCTCCCCCGCAGACGCCACTTGGCCGTGCGCCTGG
CCGTGGTGGGCAGCGCCTTCATGTTCTTCCTCTTCATCCTGCAGCGGGATGTAAGCCACA
GGGAGCAGGCCACAGAGAAACCATGGCTGAGGTCCTTGGTGAGCCAGAAGGATCACGTCC
TGGACTTGATGCTGGGGGCGGTGAATAACCTCAGGGATTCGATGCCCAAACTCCAAATCA
GGGCTCCGGAGCCCCAGCAGACACTGGTCTCCACAAACCAGACCTGCCTCCCTGGCTTCT
ACACCCCAGCTGAGCTGAAGCCCTTCTGGGAACGGCCACCACAGGACCCCAACAGCCCTG
GGGCAGATGGGAAGGCATTTCAGAAGAAAGAGTGGACGCTCCTAGAGACCCAAGAAAAGG
AAAAGGGCTATAAGAAGCACTGCTTCAATGCCTTTGCCAGTGACCGCATCTCCCTGCAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCACGACACATCAAGCAGTTTCCAGGCTCGGGCCCAGCCCTCGGAGCTGACCCAGGCAGG
GGCCCCACTGGTTCCAGAGGATGCGGCTCCCCCGCAGACGCCACTTGGCCGTGCGCCTGG
CCGTGGTGGGCAGCGCCTTCATGTTCTTCCTCTTCATCCTGCAGCGGGATGTAAGCCACA
GGGAGCAGGCCACAGAGAAACCATGGCTGAGGTCCTTGGTGAGCCAGAAGGATCACGTCC
TGGACTTGATGCTGGGGGCGGTGAATAACCTCAGGGATTCGATGCCCAAACTCCAAATCA
GGGCTCCGGAGCCCCAGCAGACACTGGTCTCCACAAACCAGACCTGCCTCCCTGGCTTCT
ACACCCCAGCTGAGCTGAAGCCCTTCTGGGAACGGCCACCACAGGACCCCAACAGCCCTG
GGGCAGATGGGAAGGCATTTCAGAAGAAAGAGTGGACGCTCCTAGAGACCCAAGAAAAGG
AAAAGGGCTATAAGAAGCACTGCTTCAATGCCTTTGCCAGTGACCGCATCTCCCTGCAGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|34868191|ref|XP_235663.2|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|34868191|ref|XP_235663.2|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               281-440, - strand, RNAz p=0.850936

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-440, - strand, RNAz p=0.850936

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-540, gnl|bosTau2|chr5 (20907219-20906680)
               

               
               1-540, gnl|Hg17|chr12 (50059912-50059373)
               

               
               1-540, gnl|Mm7|chr15 (100701738-100701204)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-540, gnl|bosTau2|chr5 (20907219-20906680)
               

               
               1-540, gnl|Hg17|chr12 (50059912-50059373)
               

               
               1-540, gnl|Mm7|chr15 (100701738-100701204)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cst (0.140036)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)

	1-540, gnl\|bosTau2\|chr5 (20907219-20906680)
	1-540, gnl\|Hg17\|chr12 (50059912-50059373)
	1-540, gnl\|Mm7\|chr15 (100701738-100701204)